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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1581 and Ac3H11_1582 are separated by 103 nucleotides
Ac3H11_1582 and Ac3H11_1583 are separated by 110 nucleotides
Ac3H11_1583 and Ac3H11_1584 are separated by 34 nucleotides
Ac3H11_1584 and Ac3H11_1585 are separated by 154 nucleotides
Ac3H11_1581 - Phosphate:acyl-ACP acyltransferase PlsX, at 162,572 to 163,624
_1581
Ac3H11_1582 - LSU ribosomal protein L32p, at 163,728 to 163,910
_1582
Ac3H11_1583 - COG1399 protein, clustered with ribosomal protein L32p, at 164,021 to 164,596
_1583
Ac3H11_1584 - Septum formation protein Maf, at 164,631 to 165,194
_1584
Ac3H11_1585 - Tetrapyrrole methylase family protein, at 165,349 to 166,125
_1585
Group
Condition
Ac3H11
_1581
Ac3H11
_1582
Ac3H11
_1583
Ac3H11
_1584
Ac3H11
_1585
stress
Sisomicin 0.0005 mg/ml
N.D.
N.D.
-4.2
N.D.
-0.4
lb
LB
N.D.
N.D.
-3.8
N.D.
-0.7
stress
Aluminum chloride 2 mM
N.D.
N.D.
-4.0
N.D.
-0.2
stress
Cobalt chloride 0.16 mM
N.D.
N.D.
-3.7
N.D.
-0.5
nitrogen source
L-Alanine (N)
N.D.
N.D.
-4.2
N.D.
+0.0
stress
Zinc 1 mM
N.D.
N.D.
-3.4
N.D.
-0.7
stress
Nickel (II) chloride 0.6 mM
N.D.
N.D.
-3.8
N.D.
-0.4
nitrogen source
Uridine (N)
N.D.
N.D.
-3.9
N.D.
-0.0
stress
Bacitracin 0.032 mg/ml
N.D.
N.D.
-4.0
N.D.
+0.1
stress
copper (II) chloride 1 mM
N.D.
N.D.
-3.5
N.D.
-0.4
lb
LB
N.D.
N.D.
-3.2
N.D.
-0.6
stress
Paraquat dichloride 0.01 mg/ml
N.D.
N.D.
-3.7
N.D.
+0.1
lb
LB
N.D.
N.D.
-3.4
N.D.
-0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
N.D.
-2.7
N.D.
-0.6
stress
copper (II) chloride 2 mM
N.D.
N.D.
-2.6
N.D.
-0.7
stress
Cisplatin 0.005 mg/ml
N.D.
N.D.
-3.6
N.D.
+0.4
pH
LB, pH10
N.D.
N.D.
-3.2
N.D.
+0.2
stress
Chlorate 20 mM
N.D.
N.D.
-2.6
N.D.
-0.4
stress
Cobalt chloride 0.32 mM
N.D.
N.D.
-2.4
N.D.
-0.5
stress
Cisplatin 0.0025 mg/ml
N.D.
N.D.
-2.2
N.D.
-0.7
lb
LB
N.D.
N.D.
-2.7
N.D.
-0.2
stress
A22 0.025 mg/ml
N.D.
N.D.
-2.7
N.D.
-0.0
lb
LB
N.D.
N.D.
-2.7
N.D.
-0.0
stress
Phosphomycin 0.06 mg/ml
N.D.
N.D.
-3.0
N.D.
+0.3
nitrogen source
L-tyrosine (N)
N.D.
N.D.
-2.7
N.D.
+0.0
nitrogen source
Ammonium chloride (N)
N.D.
N.D.
-2.7
N.D.
+0.1
stress
Fusidic 0.001 mg/ml
N.D.
N.D.
-2.9
N.D.
+0.3
stress
Chlorite 0.1 mM
N.D.
N.D.
-2.9
N.D.
+0.6
stress
Bacitracin 0.016 mg/ml
N.D.
N.D.
-2.5
N.D.
+0.4
stress
Tetracycline 0.0001 mg/ml
N.D.
N.D.
-2.1
N.D.
+1.0
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