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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1555 and Ac3H11_1556 overlap by 4 nucleotides
Ac3H11_1556 and Ac3H11_1557 are separated by 13 nucleotides
Ac3H11_1557 and Ac3H11_1558 are separated by 120 nucleotides
Ac3H11_1558 and Ac3H11_1559 are separated by 79 nucleotides
Ac3H11_1555 - Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-), at 138,348 to 138,905
_1555
Ac3H11_1556 - HpcH/HpaI aldolase, at 138,902 to 139,708
_1556
Ac3H11_1557 - Proposed peptidoglycan lipid II flippase MurJ, at 139,722 to 141,254
_1557
Ac3H11_1558 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 141,375 to 142,919
_1558
Ac3H11_1559 - Response regulator, at 142,999 to 144,033
_1559
Group
Condition
Ac3H11
_1555
Ac3H11
_1556
Ac3H11
_1557
Ac3H11
_1558
Ac3H11
_1559
pH
LB, pH5
-0.7
-3.3
-1.8
N.D.
+0.2
nitrogen source
L-Proline (N)
+0.1
-3.1
-2.4
N.D.
-0.1
pH
LB, pH5
-0.7
-2.7
-2.0
N.D.
+0.1
stress
Nickel (II) chloride 0.8 mM
-0.1
-4.5
-0.5
N.D.
-0.2
nitrogen source
Ammonium chloride (N)
-0.0
-2.5
-1.9
N.D.
-0.8
nitrogen source
L-Alanine (N)
-0.1
-3.8
-0.7
N.D.
-0.3
stress
Phosphomycin 0.06 mg/ml
+0.1
-4.3
-0.8
N.D.
+0.7
stress
Phosphomycin 0.02 mg/ml
-0.2
-3.7
-0.7
N.D.
+0.5
carbon source
D-Gluconic Acid (C)
-1.6
-4.1
+2.4
N.D.
-0.3
nitrogen source
L-Isoleucine (N)
-0.2
-2.3
-0.7
N.D.
-0.4
carbon source
Tween 20 (C)
+0.3
-3.3
-0.5
N.D.
-0.0
stress
Fusidic 0.001 mg/ml
-0.3
-1.3
-1.5
N.D.
+0.1
nitrogen source
L-Leucine (N)
-0.1
-1.8
-0.9
N.D.
-0.2
carbon source
D-Ribose (C)
-0.1
-3.0
+0.4
N.D.
-0.2
carbon source
D-Glucose (C)
-0.3
-1.6
-0.9
N.D.
+0.1
carbon source
D-Mannose (C)
+0.1
-1.5
-1.3
N.D.
+0.1
carbon source
a-Ketoglutaric (C)
-0.9
-1.4
+0.3
N.D.
-0.6
nitrogen source
L-Threonine (N)
+0.2
-1.8
-0.6
N.D.
-0.4
carbon source
D-Gluconic Acid (C)
-1.6
-2.1
+2.0
N.D.
-0.2
stress
nitrate 45 mM
+0.3
-2.3
+0.4
N.D.
-0.2
motility
inner cut, R2A soft agar motility assay
+0.5
-1.9
+0.5
N.D.
-0.1
carbon source
L-Malic (C)
-0.5
-1.7
+1.1
N.D.
+0.3
stress
Bacitracin 0.032 mg/ml
-0.2
+0.6
-1.8
N.D.
+0.6
stress
copper (II) chloride 1 mM
+0.4
-0.6
-0.8
N.D.
+1.2
stress
Sisomicin 0.0005 mg/ml
+0.3
-0.6
-0.8
N.D.
+1.2
stress
Cobalt chloride 0.16 mM
+0.9
+0.1
-1.4
N.D.
+1.3
stress
Nickel (II) chloride 0.6 mM
+0.3
-0.8
-0.4
N.D.
+1.9
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.4
+0.6
-2.0
N.D.
+2.1
lb
LB
+0.5
+0.3
-1.1
N.D.
+2.4
lb
LB
+0.8
+0.3
-0.7
N.D.
+2.4
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