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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1548 and Ac3H11_1549 are separated by 542 nucleotides
Ac3H11_1549 and Ac3H11_1550 overlap by 10 nucleotides
Ac3H11_1550 and Ac3H11_1551 are separated by 1001 nucleotides
Ac3H11_1551 and Ac3H11_1552 are separated by 24 nucleotides
Ac3H11_1548 - hypothetical protein, at 129,653 to 129,781
_1548
Ac3H11_1549 - PseA protein, at 130,324 to 131,025
_1549
Ac3H11_1550 - hypothetical protein, at 131,016 to 131,264
_1550
Ac3H11_1551 - Glutamine synthetase type I (EC 6.3.1.2), at 132,266 to 133,573
_1551
Ac3H11_1552 - Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4), at 133,598 to 135,352
_1552
Group
Condition
Ac3H11
_1548
Ac3H11
_1549
Ac3H11
_1550
Ac3H11
_1551
Ac3H11
_1552
carbon source
D-Gluconic Acid (C)
-0.8
-1.0
-1.2
-0.5
-1.1
carbon source
D-Gluconic Acid (C)
+0.0
-1.1
-1.6
-0.7
-1.1
pH
LB, pH5
-0.7
-0.6
-0.7
-0.7
-0.7
pH
LB, pH5
+0.2
-0.6
-0.5
-0.8
-0.8
stress
Nickel (II) chloride 0.8 mM
-1.2
-0.4
-0.1
-0.4
-0.4
nitrogen source
Ammonium chloride (N)
-3.0
+0.2
-0.2
+0.2
+0.4
stress
Chlorite 0.1 mM
-1.7
+0.0
-0.3
-0.0
-0.0
nitrogen source
D-Alanine (N)
-1.4
-0.1
-0.4
-0.0
-0.1
carbon source
L-Malic (C)
-0.3
-0.3
-0.4
-0.5
-0.4
phage
phage 93.1
-1.8
+0.1
-0.2
-0.0
-0.0
carbon source
a-Ketoglutaric (C)
-0.1
-0.4
-0.6
-0.2
-0.5
stress
nitrate 100 mM
-1.5
-0.0
-0.4
+0.1
+0.0
carbon source
a-Ketoglutaric (C)
+0.0
-0.5
-0.1
-0.5
-0.7
stress
Cisplatin 0.0025 mg/ml
-1.3
-0.1
+0.0
+0.0
-0.2
stress
Tetracycline 0.0001 mg/ml
+0.2
-0.4
-0.8
-0.1
-0.4
stress
D-Cycloserine 0.05 mg/ml
-1.2
+0.1
+0.5
+0.3
+0.1
stress
Cisplatin 0.005 mg/ml
+1.1
-0.3
+0.1
-0.1
-0.5
stress
Paraquat dichloride 0.01 mg/ml
+0.9
-0.0
-0.4
+0.2
+0.2
pH
LB, pH10
+1.2
+0.2
-0.1
-0.0
-0.2
stress
Aluminum chloride 4 mM
+0.9
+0.2
+0.3
+0.1
-0.0
stress
Zinc 1 mM
+0.8
+0.1
+0.0
+0.4
+0.2
stress
Cobalt chloride 0.32 mM
+0.4
+0.3
+0.3
+0.4
+0.4
stress
copper (II) chloride 1 mM
+0.3
+0.4
+0.4
+0.5
+0.5
stress
Nickel (II) chloride 0.6 mM
+0.3
+0.4
+0.3
+0.6
+0.6
stress
Sisomicin 0.0005 mg/ml
+0.7
+0.3
+0.3
+0.5
+0.5
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.8
+0.4
+0.3
+0.5
+0.6
stress
Cobalt chloride 0.32 mM
+0.4
+0.7
+0.7
+0.9
+0.9
lb
LB
+0.8
+0.6
+0.7
+0.8
+0.9
lb
LB
+1.0
+0.7
+0.6
+0.8
+0.9
stress
Cobalt chloride 0.16 mM
+0.7
+0.7
+0.6
+1.0
+1.0
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