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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1545 and Ac3H11_1546 are separated by 429 nucleotides
Ac3H11_1546 and Ac3H11_1547 are separated by 723 nucleotides
Ac3H11_1547 and Ac3H11_1548 are separated by 1242 nucleotides
Ac3H11_1548 and Ac3H11_1549 are separated by 542 nucleotides
Ac3H11_1545 - Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase, at 124,556 to 125,851
_1545
Ac3H11_1546 - hypothetical protein, at 126,281 to 126,403
_1546
Ac3H11_1547 - LPS biosynthesis protein WbpG, at 127,127 to 128,410
_1547
Ac3H11_1548 - hypothetical protein, at 129,653 to 129,781
_1548
Ac3H11_1549 - PseA protein, at 130,324 to 131,025
_1549
Group
Condition
Ac3H11
_1545
Ac3H11
_1546
Ac3H11
_1547
Ac3H11
_1548
Ac3H11
_1549
carbon source
D-Gluconic Acid (C)
-0.9
-1.0
-0.9
-0.8
-1.0
carbon source
D-Gluconic Acid (C)
-1.1
-0.6
-1.0
+0.0
-1.1
pH
LB, pH5
-0.6
-0.9
-0.7
-0.7
-0.6
nitrogen source
D-Alanine (N)
-0.3
-1.2
-0.2
-1.4
-0.1
stress
Chlorite 0.1 mM
-0.3
-0.7
-0.1
-1.7
+0.0
stress
Nickel (II) chloride 0.8 mM
-0.4
-0.3
-0.4
-1.2
-0.4
nitrogen source
Ammonium chloride (N)
+0.1
+0.0
+0.3
-3.0
+0.2
pH
LB, pH5
-0.7
-0.6
-0.6
+0.2
-0.6
carbon source
a-Ketoglutaric (C)
-0.6
-0.7
-0.4
+0.0
-0.5
stress
Cisplatin 0.0025 mg/ml
-0.2
-0.1
-0.0
-1.3
-0.1
carbon source
pyruvate (C)
-0.2
-0.3
-0.2
-0.8
-0.2
carbon source
L-Malic (C)
-0.3
-0.4
-0.4
-0.3
-0.3
stress
sodium fluoride 20 mM
-0.2
-0.4
-0.2
-0.7
-0.1
stress
nitrate 100 mM
+0.0
-0.2
+0.1
-1.5
-0.0
stress
Tetracycline 0.0001 mg/ml
-0.5
-0.5
-0.4
+0.2
-0.4
phage
phage 93.1
+0.1
+0.3
+0.1
-1.8
+0.1
nitrogen source
L-Alanine (N)
-0.0
-0.7
+0.1
-0.5
+0.2
stress
D-Cycloserine 0.05 mg/ml
+0.2
+0.8
+0.2
-1.2
+0.1
stress
Cisplatin 0.005 mg/ml
-0.3
+0.1
-0.1
+1.1
-0.3
carbon source
pyruvate (C)
+0.3
+0.4
+0.3
-0.3
+0.3
pH
LB, pH10
+0.1
+0.0
-0.1
+1.2
+0.2
nitrogen source
L-Arginine (N)
+0.2
+0.2
+0.3
+0.6
+0.3
stress
copper (II) chloride 1 mM
+0.2
+0.4
+0.3
+0.3
+0.4
stress
Aluminum chloride 4 mM
+0.2
+0.2
+0.2
+0.9
+0.2
stress
Sisomicin 0.0005 mg/ml
+0.3
+0.1
+0.2
+0.7
+0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
+0.4
+0.1
+0.8
+0.4
stress
Cobalt chloride 0.32 mM
+0.6
+0.8
+0.4
+0.4
+0.7
lb
LB
+0.6
+0.5
+0.5
+0.8
+0.6
lb
LB
+0.5
+0.6
+0.4
+1.0
+0.7
stress
Cobalt chloride 0.16 mM
+0.6
+0.8
+0.5
+0.7
+0.7
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