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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1540 and Ac3H11_1541 are separated by 523 nucleotides
Ac3H11_1541 and Ac3H11_1542 are separated by 77 nucleotides
Ac3H11_1542 and Ac3H11_1543 overlap by 4 nucleotides
Ac3H11_1543 and Ac3H11_1544 overlap by 4 nucleotides
Ac3H11_1540 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 118,266 to 119,138
_1540
Ac3H11_1541 - Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase, at 119,662 to 120,315
_1541
Ac3H11_1542 - N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43), at 120,393 to 121,004
_1542
Ac3H11_1543 - Pseudaminic acid cytidylyltransferase (EC 2.7.7.43), at 121,001 to 122,500
_1543
Ac3H11_1544 - N-acetylneuraminate synthase (EC 2.5.1.56), at 122,497 to 123,558
_1544
Group
Condition
Ac3H11
_1540
Ac3H11
_1541
Ac3H11
_1542
Ac3H11
_1543
Ac3H11
_1544
carbon source
D-Gluconic Acid (C)
-1.0
-1.0
-1.0
-1.0
-1.1
carbon source
D-Gluconic Acid (C)
-1.0
-0.6
-0.7
-0.8
-1.1
pH
LB, pH5
-0.7
-0.6
-0.8
-0.9
-0.7
pH
LB, pH5
-0.6
-0.8
-0.6
-0.9
-0.7
carbon source
a-Ketoglutaric (C)
-0.6
-0.7
-0.4
-0.6
-0.6
stress
Tetracycline 0.0001 mg/ml
-0.8
-0.4
-0.6
-0.2
-0.6
stress
Nickel (II) chloride 0.8 mM
-0.3
-0.5
-0.5
-0.7
-0.4
carbon source
a-Ketoglutaric (C)
-0.6
-0.4
-0.3
-0.4
-0.4
stress
sodium fluoride 20 mM
-0.2
-0.5
-0.2
-0.6
-0.2
carbon source
pyruvate (C)
-0.2
-0.2
-0.2
-0.6
-0.3
nitrogen source
D-Alanine (N)
-0.1
-0.4
-0.3
-0.3
-0.3
stress
syringaldehyde 2.5 mM
-0.1
-0.5
-0.2
-0.5
-0.1
stress
Cisplatin 0.005 mg/ml
-0.3
-0.5
+0.0
-0.2
-0.3
stress
nitrate 45 mM
-0.0
-0.5
-0.2
-0.6
-0.1
carbon source
L-Malic (C)
-0.3
-0.1
-0.4
-0.1
-0.4
carbon source
Glycerol (C)
+0.2
+0.4
+0.1
+0.3
+0.2
nitrogen source
L-Arginine (N)
+0.2
+0.3
+0.4
+0.4
+0.3
stress
Nickel (II) chloride 0.6 mM
+0.2
+0.3
+0.4
+0.4
+0.3
stress
copper (II) chloride 1 mM
+0.2
+0.3
+0.3
+0.3
+0.4
carbon source
pyruvate (C)
+0.1
+0.6
+0.3
+0.4
+0.2
stress
Sisomicin 0.0005 mg/ml
+0.3
+0.2
+0.4
+0.3
+0.4
stress
Cobalt chloride 0.32 mM
+0.2
+0.4
+0.3
+0.5
+0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.4
+0.1
+0.4
+0.5
+0.3
nitrogen source
L-Histidine (N)
+0.3
+0.3
+0.3
+0.4
+0.3
carbon source
L-Lactate (C)
+0.3
+0.6
+0.3
+0.4
+0.2
carbon source
pyruvate (C)
+0.3
+0.5
+0.4
+0.5
+0.3
lb
LB
+0.6
+0.4
+0.5
+0.6
+0.5
lb
LB
+0.5
+0.6
+0.5
+0.7
+0.6
stress
Cobalt chloride 0.16 mM
+0.6
+0.5
+0.6
+0.7
+0.7
stress
Cobalt chloride 0.32 mM
+0.6
+0.5
+0.6
+0.7
+0.6
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