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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1537 and Ac3H11_1538 are separated by 97 nucleotides
Ac3H11_1538 and Ac3H11_1539 are separated by 21 nucleotides
Ac3H11_1539 and Ac3H11_1540 are separated by 236 nucleotides
Ac3H11_1540 and Ac3H11_1541 are separated by 523 nucleotides
Ac3H11_1537 - Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock), at 114,906 to 115,454
_1537
Ac3H11_1538 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 115,552 to 116,187
_1538
Ac3H11_1539 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 116,209 to 118,029
_1539
Ac3H11_1540 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 118,266 to 119,138
_1540
Ac3H11_1541 - Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase, at 119,662 to 120,315
_1541
Group
Condition
Ac3H11
_1537
Ac3H11
_1538
Ac3H11
_1539
Ac3H11
_1540
Ac3H11
_1541
carbon source
D-Gluconic Acid (C)
-0.3
-0.2
-1.2
-1.0
-1.0
carbon source
D-Gluconic Acid (C)
+0.0
-0.3
-1.1
-1.0
-0.6
pH
LB, pH5
-0.1
-0.2
-0.6
-0.6
-0.8
pH
LB, pH5
-0.1
-0.1
-0.6
-0.7
-0.6
stress
Tetracycline 0.0001 mg/ml
-0.1
-0.1
-0.3
-0.8
-0.4
carbon source
a-Ketoglutaric (C)
+0.0
+0.5
-0.7
-0.6
-0.7
stress
Cisplatin 0.005 mg/ml
-0.0
-0.3
-0.1
-0.3
-0.5
carbon source
L-Malic (C)
-0.3
+0.1
-0.5
-0.3
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.3
-0.4
+0.1
-0.2
-0.2
stress
Cobalt chloride 0.32 mM
-0.0
-0.0
-0.6
-0.5
+0.2
nitrogen source
D-Alanine (N)
+0.0
-0.5
+0.0
-0.1
-0.4
carbon source
a-Ketoglutaric (C)
+0.2
+0.5
-0.4
-0.6
-0.4
stress
Nickel (II) chloride 0.8 mM
+0.1
+0.2
-0.1
-0.3
-0.5
carbon source
pyruvate (C)
-0.2
+0.2
-0.3
-0.2
-0.2
stress
syringaldehyde 2.5 mM
+0.2
-0.3
+0.1
-0.1
-0.5
stress
Fusidic 0.001 mg/ml
+0.1
+0.2
-0.2
-0.3
-0.3
stress
sodium fluoride 20 mM
-0.0
+0.2
+0.2
-0.2
-0.5
nitrogen source
Ammonium chloride (N)
-0.3
-0.4
+0.2
+0.3
+0.1
stress
Sisomicin 0.0005 mg/ml
-0.1
-0.2
+0.4
+0.3
+0.2
carbon source
succinate (C)
+0.1
+0.8
-0.2
-0.1
+0.1
stress
copper (II) chloride 1 mM
+0.1
-0.2
+0.5
+0.2
+0.3
stress
Cobalt chloride 0.32 mM
+0.2
-0.1
+0.2
+0.2
+0.4
stress
Nickel (II) chloride 0.6 mM
+0.1
-0.1
+0.5
+0.2
+0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.2
+0.6
+0.4
+0.1
nitrogen source
L-Histidine (N)
+0.3
+0.1
+0.3
+0.3
+0.3
lb
LB
-0.1
-0.1
+0.7
+0.6
+0.4
carbon source
L-Lactate (C)
+0.3
+0.3
+0.1
+0.3
+0.6
stress
Cobalt chloride 0.32 mM
-0.1
-0.1
+0.7
+0.6
+0.5
lb
LB
+0.0
-0.0
+0.8
+0.5
+0.6
stress
Cobalt chloride 0.16 mM
-0.0
+0.3
+0.8
+0.6
+0.5
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