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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1503 and Ac3H11_1504 overlap by 4 nucleotides
Ac3H11_1504 and Ac3H11_1505 are separated by 106 nucleotides
Ac3H11_1505 and Ac3H11_1506 are separated by 22 nucleotides
Ac3H11_1506 and Ac3H11_1507 are separated by 35 nucleotides
Ac3H11_1503 - Molybdopterin biosynthesis protein MoeA, at 81,583 to 82,830
_1503
Ac3H11_1504 - Molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 82,827 to 83,396
_1504
Ac3H11_1505 - Threonine synthase (EC 4.2.3.1), at 83,503 to 84,948
_1505
Ac3H11_1506 - hypothetical protein, at 84,971 to 85,285
_1506
Ac3H11_1507 - Homoserine dehydrogenase (EC 1.1.1.3), at 85,321 to 86,655
_1507
Group
Condition
Ac3H11
_1503
Ac3H11
_1504
Ac3H11
_1505
Ac3H11
_1506
Ac3H11
_1507
nitrogen source
L-Histidine (N)
-0.8
-0.4
N.D.
+0.0
-1.6
stress
2-Furfuraldehyde 0.06 vol%
-1.0
-1.0
N.D.
-0.1
-0.5
stress
Fusidic 0.001 mg/ml
-0.4
-0.6
N.D.
-0.3
-0.9
stress
Paraquat dichloride 0.01 mg/ml
-0.6
-0.9
N.D.
+0.2
-1.0
stress
Bacitracin 0.016 mg/ml
-0.4
-0.5
N.D.
-0.2
-1.0
stress
Chlorite 0.1 mM
-0.0
-0.8
N.D.
-0.1
-1.1
stress
nitrite 10 mM
-0.4
-0.8
N.D.
+0.6
-1.5
stress
Aluminum chloride 2 mM
-0.3
-0.5
N.D.
-0.3
-1.0
stress
Cisplatin 0.005 mg/ml
-0.5
-0.9
N.D.
+0.4
-1.0
carbon source
D-Glucose (C)
-0.5
-0.2
N.D.
+0.2
-1.5
stress
A22 0.025 mg/ml
-0.2
-0.8
N.D.
-0.3
-0.6
stress
Zinc 1 mM
-0.5
-0.9
N.D.
+0.1
-0.6
stress
Phosphomycin 0.02 mg/ml
-0.2
-0.7
N.D.
+0.2
-1.2
stress
Bacitracin 0.008 mg/ml
+0.0
-0.4
N.D.
-0.4
-1.0
carbon source
D-Glucose (C)
-0.4
-0.3
N.D.
+0.1
-1.2
lb
LB
-0.6
-0.5
N.D.
+0.7
-1.2
motility
inner cut, R2A soft agar motility assay
+0.5
-1.0
N.D.
-1.2
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.5
-0.5
N.D.
+0.5
-1.1
stress
Cobalt chloride 0.32 mM
+0.1
-0.5
N.D.
+0.5
-1.6
nitrogen source
L-Proline (N)
-0.2
+0.1
N.D.
+0.2
-1.5
stress
Bacitracin 0.032 mg/ml
-0.5
-0.7
N.D.
+0.9
-0.9
carbon source
D-Ribose (C)
-0.8
-0.6
N.D.
+0.5
-0.3
lb
LB
-0.3
-0.5
N.D.
+0.8
-0.8
stress
Nickel (II) chloride 0.6 mM
+0.5
+0.8
N.D.
-0.3
-0.7
nitrogen source
Ammonium chloride (N)
+0.5
+0.5
N.D.
+0.4
-0.8
stress
D-Cycloserine 0.05 mg/ml
-0.3
+0.5
N.D.
+0.4
+1.1
nitrogen source
L-tyrosine (N)
+1.1
+1.1
N.D.
+0.1
+0.2
pH
LB, pH10
+0.4
+0.3
N.D.
-0.0
+2.1
pH
LB, pH10
+0.3
+0.6
N.D.
+0.4
+2.0
stress
Chlorate 20 mM
+3.0
+2.4
N.D.
-0.0
-0.4
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