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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1498 and Ac3H11_1499 are separated by 11 nucleotides
Ac3H11_1499 and Ac3H11_1500 are separated by 10 nucleotides
Ac3H11_1500 and Ac3H11_1501 are separated by 267 nucleotides
Ac3H11_1501 and Ac3H11_1502 overlap by 14 nucleotides
Ac3H11_1498 - Short-chain dehydrogenase/reductase SDR, at 78,053 to 78,850
_1498
Ac3H11_1499 - MoaF protein precursor, at 78,862 to 79,662
_1499
Ac3H11_1500 - Ketosteroid isomerase-related protein, at 79,673 to 80,065
_1500
Ac3H11_1501 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 80,333 to 81,262
_1501
Ac3H11_1502 - Molybdenum cofactor biosynthesis protein MoaD, at 81,249 to 81,503
_1502
Group
Condition
Ac3H11
_1498
Ac3H11
_1499
Ac3H11
_1500
Ac3H11
_1501
Ac3H11
_1502
nitrogen source
L-Alanine (N)
-2.2
-0.2
+0.1
-0.2
N.D.
stress
Cisplatin 0.0025 mg/ml
-0.9
-0.0
-0.4
-0.5
N.D.
stress
Cisplatin 0.005 mg/ml
-0.9
-0.3
-0.3
-0.2
N.D.
stress
Cobalt chloride 0.4 mM
-0.2
-0.2
-0.5
-0.0
N.D.
lb
LB
-0.4
-0.0
-0.1
-0.4
N.D.
stress
nitrate 100 mM
+0.1
+0.0
-0.5
-0.3
N.D.
phage
phage 93.2
-0.8
-0.2
+0.4
+0.0
N.D.
pH
LB, pH10
-0.1
+0.3
-0.1
-0.4
N.D.
stress
Bacitracin 0.008 mg/ml
-0.7
+0.1
+0.4
-0.0
N.D.
stress
perchlorate 10 mM
-0.4
+0.0
+0.3
+0.2
N.D.
stress
Fusidic 0.001 mg/ml
+0.5
-0.1
-0.2
+0.1
N.D.
nitrogen source
L-Isoleucine (N)
+0.5
+0.2
+0.1
-0.5
N.D.
stress
Cobalt chloride 0.16 mM
+0.4
+0.1
+0.1
-0.2
N.D.
lb
LB
+0.6
-0.0
+0.1
-0.2
N.D.
stress
Sisomicin 0.001 mg/ml
+0.2
-0.1
+0.6
-0.2
N.D.
carbon source
pyruvate (C)
+0.5
+0.2
+0.2
-0.0
N.D.
phage
phage 93.1
+1.0
-0.1
+0.2
-0.2
N.D.
pH
LB, pH8
+0.4
+0.2
+0.3
+0.0
N.D.
motility
inner cut, R2A soft agar motility assay
+0.7
+0.0
+0.1
+0.1
N.D.
carbon source
D-Lactate (C)
+0.5
+0.1
+0.4
-0.0
N.D.
carbon source
D-Fructose (C)
+0.5
+0.3
+0.2
+0.1
N.D.
carbon source
pyruvate (C)
+0.3
+0.2
+0.5
-0.0
N.D.
carbon source
D,L-Lactate (C)
+0.3
+0.2
+0.5
+0.1
N.D.
carbon source
D-Gluconic Acid (C)
+0.3
+0.0
+0.6
+0.1
N.D.
pH
LB, pH9
+0.6
+0.2
+0.1
+0.1
N.D.
nitrogen source
D-Alanine (N)
+0.4
+0.2
+0.4
+0.1
N.D.
pH
LB, pH10
+1.0
+0.4
-0.0
-0.2
N.D.
motility
inner cut, R2A soft agar motility assay
+0.9
-0.1
+0.6
-0.1
N.D.
pH
LB, pH7
+0.7
+0.3
+0.2
+0.2
N.D.
carbon source
a-Ketoglutaric (C)
+1.4
+0.4
+0.8
-0.1
N.D.
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