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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1456 and Ac3H11_1457 are separated by 207 nucleotides
Ac3H11_1457 and Ac3H11_1458 are separated by 2986 nucleotides
Ac3H11_1458 and Ac3H11_1459 are separated by 564 nucleotides
Ac3H11_1459 and Ac3H11_1460 are separated by 24 nucleotides
Ac3H11_1456 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 28,955 to 31,198
_1456
Ac3H11_1457 - SSU ribosomal protein S15p (S13e), at 31,406 to 31,672
_1457
Ac3H11_1458 - hypothetical protein, at 34,659 to 34,811
_1458
Ac3H11_1459 - Type IV fimbrial biogenesis protein PilX, at 35,376 to 35,984
_1459
Ac3H11_1460 - Type IV fimbrial biogenesis protein PilY1, at 36,009 to 39,338
_1460
Group
Condition
Ac3H11
_1456
Ac3H11
_1457
Ac3H11
_1458
Ac3H11
_1459
Ac3H11
_1460
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
-1.1
-0.8
-0.7
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
-0.9
-0.6
-0.6
nitrogen source
L-tyrosine (N)
N.D.
N.D.
-0.6
-0.3
-0.4
nitrogen source
Ammonium chloride (N)
N.D.
N.D.
-1.0
-0.3
-0.1
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
-0.5
-0.3
-0.2
carbon source
pyruvate (C)
N.D.
N.D.
-0.3
-0.4
-0.2
nitrogen source
L-Arginine (N)
N.D.
N.D.
-0.5
-0.2
-0.1
carbon source
pyruvate (C)
N.D.
N.D.
-0.4
-0.3
-0.2
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
-0.4
-0.1
-0.2
nitrogen source
Uridine (N)
N.D.
N.D.
-0.1
-0.3
-0.1
pH
LB, pH10
N.D.
N.D.
-0.4
+0.0
-0.1
stress
Aluminum chloride 2 mM
N.D.
N.D.
-0.2
-0.1
-0.2
stress
nitrite 10 mM
N.D.
N.D.
-0.2
-0.3
-0.0
stress
Bacitracin 0.008 mg/ml
N.D.
N.D.
-0.3
-0.2
+0.0
stress
Chlorite 0.1 mM
N.D.
N.D.
-0.2
-0.1
-0.2
nitrogen source
L-Alanine (N)
N.D.
N.D.
-0.3
-0.1
-0.0
lb
LB
N.D.
N.D.
-0.3
-0.1
+0.0
stress
sodium fluoride 50 mM
N.D.
N.D.
-0.5
-0.0
+0.1
stress
Cisplatin 0.005 mg/ml
N.D.
N.D.
-0.2
+0.1
-0.2
carbon source
D-Lactate (C)
N.D.
N.D.
+0.3
-0.1
+0.0
stress
nitrate 100 mM
N.D.
N.D.
+0.4
-0.1
-0.0
stress
Chloramphenicol 0.001 mg/ml
N.D.
N.D.
+0.2
+0.1
+0.1
phage
phage 93.2
N.D.
N.D.
+0.2
+0.1
+0.1
stress
Nickel (II) chloride 0.6 mM
N.D.
N.D.
+0.4
+0.0
+0.1
motility
inner cut, R2A soft agar motility assay
N.D.
N.D.
+0.5
+0.1
+0.0
phage
phage 93.1
N.D.
N.D.
+0.3
+0.1
+0.2
stress
D-Cycloserine 0.05 mg/ml
N.D.
N.D.
+0.5
+0.1
+0.1
lb
LB
N.D.
N.D.
+0.3
+0.2
+0.2
lb
LB
N.D.
N.D.
+0.3
+0.2
+0.3
phage
phage 93.1
N.D.
N.D.
+0.4
+0.3
+0.2
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