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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1410 and Ac3H11_1411 are separated by 19 nucleotides
Ac3H11_1411 and Ac3H11_1412 overlap by 11 nucleotides
Ac3H11_1412 and Ac3H11_1413 are separated by 7 nucleotides
Ac3H11_1413 and Ac3H11_1414 are separated by 10 nucleotides
Ac3H11_1410 - Flagellar biosynthesis protein FliL, at 100,700 to 101,281
_1410
Ac3H11_1411 - Flagellar motor switch protein FliM, at 101,301 to 102,305
_1411
Ac3H11_1412 - Flagellar motor switch protein FliN, at 102,295 to 102,738
_1412
Ac3H11_1413 - Flagellar biosynthesis protein FliQ, at 102,746 to 103,120
_1413
Ac3H11_1414 - Flagellar biosynthesis protein FliP, at 103,131 to 103,910
_1414
Group
Condition
Ac3H11
_1410
Ac3H11
_1411
Ac3H11
_1412
Ac3H11
_1413
Ac3H11
_1414
nitrogen source
L-Alanine (N)
-1.3
+0.0
-0.6
N.D.
+0.1
motility
inner cut, R2A soft agar motility assay
-0.5
-0.1
-0.5
N.D.
-0.3
nitrogen source
L-Histidine (N)
+0.1
-0.7
-0.7
N.D.
-0.1
carbon source
D-Sorbitol (C)
-0.2
-0.5
-0.8
N.D.
+0.2
nitrogen source
L-Glutamine (N)
-0.1
-0.5
-0.4
N.D.
-0.1
nitrogen source
L-Leucine (N)
+0.4
-0.5
-0.9
N.D.
+0.0
stress
Cisplatin 0.005 mg/ml
-0.4
-0.2
-0.5
N.D.
-0.0
lb
LB
-0.8
-0.2
+0.2
N.D.
+0.0
nitrogen source
L-Phenylalanine (N)
-0.3
-0.3
-0.3
N.D.
+0.3
nitrogen source
L-Threonine (N)
-0.1
-0.4
-0.3
N.D.
+0.2
carbon source
D-Galactose (C)
+0.2
-0.5
-0.3
N.D.
+0.0
nitrogen source
Uridine (N)
+0.1
-0.5
-0.6
N.D.
+0.5
nitrogen source
L-Isoleucine (N)
+0.2
-0.5
-0.4
N.D.
+0.2
nitrogen source
Ammonium chloride (N)
+0.3
-0.2
-0.8
N.D.
+0.2
nitrogen source
L-Proline (N)
+0.2
-0.4
-0.2
N.D.
+0.1
carbon source
D-Fructose (C)
+0.2
-0.3
-0.2
N.D.
+0.2
nitrogen source
L-Arginine (N)
+0.4
-0.4
-0.3
N.D.
+0.1
nitrogen source
D-Alanine (N)
+0.5
-0.3
-0.4
N.D.
+0.1
carbon source
D-Mannose (C)
+0.3
-0.2
-0.1
N.D.
+0.3
pH
LB, pH10
+0.2
+0.1
+0.3
N.D.
-0.2
carbon source
L-Glutamine (C)
+0.5
-0.2
-0.0
N.D.
+0.2
carbon source
D,L-Lactate (C)
+0.5
+0.1
+0.1
N.D.
+0.3
carbon source
a-Ketoglutaric (C)
+0.6
+0.0
-0.1
N.D.
+0.4
carbon source
succinate (C)
+0.4
+0.3
+0.2
N.D.
+0.3
carbon source
succinate (C)
+0.6
+0.3
+0.1
N.D.
+0.3
carbon source
D-Gluconic Acid (C)
+0.4
+0.4
+0.3
N.D.
+0.3
phage
phage 93.1
+0.1
+0.4
+0.2
N.D.
+0.9
stress
copper (II) chloride 2 mM
+0.9
+0.1
+0.5
N.D.
+0.2
phage
phage 93.1
+0.2
+0.2
+0.4
N.D.
+0.9
phage
phage 93.2
+0.2
+0.4
+0.4
N.D.
+1.0
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