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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1395 and Ac3H11_1396 are separated by 26 nucleotides
Ac3H11_1396 and Ac3H11_1397 are separated by 114 nucleotides
Ac3H11_1397 and Ac3H11_1398 are separated by 122 nucleotides
Ac3H11_1398 and Ac3H11_1399 are separated by 320 nucleotides
Ac3H11_1395 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 83,131 to 83,946
_1395
Ac3H11_1396 - Cephalosporin hydroxylase, at 83,973 to 84,752
_1396
Ac3H11_1397 - TPR domain protein, putative component of TonB system, at 84,867 to 87,086
_1397
Ac3H11_1398 - Flagellin protein FlaB, at 87,209 to 88,693
_1398
Ac3H11_1399 - Flagellin protein FlaB, at 89,014 to 90,501
_1399
Group
Condition
Ac3H11
_1395
Ac3H11
_1396
Ac3H11
_1397
Ac3H11
_1398
Ac3H11
_1399
nitrogen source
Ammonium chloride (N)
-0.7
-1.6
-1.0
+0.2
-1.2
nitrogen source
L-Leucine (N)
-0.5
-0.8
-0.9
+0.1
-1.2
nitrogen source
L-Histidine (N)
-0.9
-0.6
-0.9
+0.0
-0.7
nitrogen source
L-Glutamine (N)
-0.6
-0.7
-0.7
+0.2
-0.6
nitrogen source
Uridine (N)
-0.6
-0.6
-0.6
+0.2
-0.7
nitrogen source
L-Isoleucine (N)
-0.6
-0.4
-0.7
+0.1
-0.6
nitrogen source
L-Proline (N)
-0.7
-0.4
-0.8
+0.2
-0.4
carbon source
D-Sorbitol (C)
-0.6
-0.4
-0.5
+0.2
-0.6
nitrogen source
L-Arginine (N)
-0.5
-0.3
-0.5
-0.1
-0.6
phage
phage 93.2
-0.4
-0.5
-0.3
+0.1
-0.6
carbon source
L-Arabinose (C)
-0.5
-0.2
-0.4
+0.2
-0.7
nitrogen source
L-Phenylalanine (N)
-0.5
-0.2
-0.5
+0.0
-0.4
carbon source
Glycerol (C)
-0.5
-0.3
-0.3
+0.1
-0.7
carbon source
D-Fructose (C)
-0.3
-0.4
-0.4
+0.1
-0.5
carbon source
D-Fructose (C)
-0.2
-0.4
-0.2
-0.2
-0.4
carbon source
L-Arabinose (C)
-0.4
-0.2
-0.4
-0.0
-0.4
carbon source
D-Glucose (C)
-0.2
-0.5
-0.3
-0.1
-0.3
carbon source
D-Galactose (C)
-0.5
-0.3
-0.3
+0.1
-0.4
carbon source
L-Asparagine (C)
-0.3
-0.3
-0.3
-0.0
-0.2
carbon source
L-Arabinose (C)
-0.3
-0.3
-0.3
-0.0
-0.3
carbon source
D-Galactose (C)
-0.1
-0.4
-0.1
-0.1
-0.6
carbon source
D-Mannose (C)
-0.3
-0.2
-0.3
+0.0
-0.3
nitrogen source
L-Alanine (N)
-0.5
-0.1
-0.2
+0.3
-0.7
phage
phage 93.1
-0.2
-0.4
+0.0
+0.1
-0.6
carbon source
Tween 20 (C)
-0.4
-0.3
-0.3
+0.3
-0.4
carbon source
succinate (C)
+0.0
-0.2
-0.1
-0.3
-0.4
carbon source
a-Ketoglutaric (C)
+0.1
-0.2
-0.1
-0.3
-0.5
motility
inner cut, R2A soft agar motility assay
+0.0
-0.2
-0.3
+0.3
-0.4
pH
LB, pH10
-0.4
-0.3
+0.1
+0.1
+0.1
stress
Cisplatin 0.005 mg/ml
+0.2
+0.3
-0.3
+0.4
-0.3
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