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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_137 and Ac3H11_138 are separated by 36 nucleotides
Ac3H11_138 and Ac3H11_139 are separated by 17 nucleotides
Ac3H11_139 and Ac3H11_140 are separated by 3 nucleotides
Ac3H11_140 and Ac3H11_141 are separated by 188 nucleotides
Ac3H11_137 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 20,789 to 22,075
_137
Ac3H11_138 - Gluconolactonase, at 22,112 to 23,035
_138
Ac3H11_139 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 23,053 to 23,955
_139
Ac3H11_140 - Tricarboxylate transport protein TctC, at 23,959 to 24,915
_140
Ac3H11_141 - Tricarboxylate transport protein TctC, at 25,104 to 26,102
_141
Group
Condition
Ac3H11
_137
Ac3H11
_138
Ac3H11
_139
Ac3H11
_140
Ac3H11
_141
stress
D-Cycloserine 0.05 mg/ml
-0.2
-0.1
-0.6
-0.7
+0.5
stress
sodium fluoride 50 mM
-0.3
+0.0
-0.6
+0.0
-0.2
pH
LB, pH10
-0.4
+0.1
-0.8
+0.5
-0.4
phage
phage 93.1
-0.2
+0.1
-0.1
-0.1
-0.5
nitrogen source
Ammonium chloride (N)
+0.2
-0.0
-0.1
-0.3
-0.5
carbon source
D-Gluconic Acid (C)
+0.3
-0.0
-0.2
-0.6
-0.2
nitrogen source
D-Alanine (N)
+0.2
+0.2
-0.3
-0.3
-0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.5
+0.3
-0.0
-0.6
-0.5
stress
Chlorite 0.1 mM
+0.0
+0.3
+0.1
-0.5
-0.1
lb
LB
-0.2
+0.3
-0.3
+0.2
-0.2
nitrogen source
L-Threonine (N)
+0.0
-0.1
-0.3
+0.4
-0.3
stress
Nickel (II) chloride 0.6 mM
+0.2
+0.2
-0.6
-0.0
+0.2
stress
Cisplatin 0.005 mg/ml
-0.0
-0.1
-0.4
+0.8
-0.3
stress
Phosphomycin 0.06 mg/ml
+0.5
+0.2
-0.4
-0.0
-0.0
carbon source
L-Lactate (C)
+0.1
+0.2
+0.2
-0.6
+0.4
motility
inner cut, R2A soft agar motility assay
+0.2
-0.1
+0.2
+0.3
-0.2
carbon source
D-Fructose (C)
+0.2
-0.0
-0.3
+0.1
+0.4
lb
LB
+0.0
+0.3
+0.2
-0.3
+0.2
carbon source
D-Galactose (C)
+0.1
+0.2
-0.2
+0.0
+0.4
carbon source
D-Glucose (C)
+0.1
+0.3
-0.3
+0.3
+0.3
stress
nitrate 100 mM
+0.0
+0.5
-0.1
+0.7
-0.3
stress
Sisomicin 0.0005 mg/ml
+0.4
+0.1
-0.1
+0.4
+0.1
stress
Cisplatin 0.0025 mg/ml
+0.4
+0.5
+0.1
+0.0
-0.3
stress
copper (II) chloride 2 mM
+0.2
+0.1
-0.4
+0.3
+0.7
nitrogen source
L-Alanine (N)
+0.2
+0.3
+0.2
-0.2
+0.4
motility
inner cut, R2A soft agar motility assay
-0.1
+0.3
+0.1
-0.2
+0.9
pH
LB, pH10
+0.2
+0.0
+0.6
+0.0
+0.3
stress
Cobalt chloride 0.32 mM
+0.4
+0.3
+0.2
+0.1
+0.2
lb
LB
+0.2
+0.3
-0.1
+0.5
+0.2
stress
perchlorate 10 mM
+0.3
+0.3
+0.8
-0.0
-0.1
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