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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1382 and Ac3H11_1383 overlap by 8 nucleotides
Ac3H11_1383 and Ac3H11_1384 overlap by 4 nucleotides
Ac3H11_1384 and Ac3H11_1385 overlap by 4 nucleotides
Ac3H11_1385 and Ac3H11_1386 are separated by 264 nucleotides
Ac3H11_1382 - FIG00538194: hypothetical protein, at 69,904 to 70,701
_1382
Ac3H11_1383 - Flagellar biosynthesis protein FlhF, at 70,694 to 72,217
_1383
Ac3H11_1384 - Flagellar biosynthesis protein FlhA, at 72,214 to 74,295
_1384
Ac3H11_1385 - Flagellar biosynthesis protein FlhB, at 74,292 to 75,446
_1385
Ac3H11_1386 - Chemotaxis response - phosphatase CheZ, at 75,711 to 76,331
_1386
Group
Condition
Ac3H11
_1382
Ac3H11
_1383
Ac3H11
_1384
Ac3H11
_1385
Ac3H11
_1386
stress
Cisplatin 0.0025 mg/ml
-0.1
-0.5
-0.2
-0.3
-0.4
stress
Zinc 1 mM
-0.7
-0.1
-0.1
-0.2
-0.2
stress
Bacitracin 0.008 mg/ml
-0.6
-0.1
-0.3
-0.1
-0.2
stress
copper (II) chloride 1 mM
-0.5
-0.2
-0.2
-0.3
-0.0
nitrogen source
D-Alanine (N)
-0.3
-0.3
+0.1
-0.3
-0.2
lb
LB
-0.0
-0.4
-0.3
-0.5
+0.2
stress
Phosphomycin 0.02 mg/ml
-0.5
-0.1
-0.2
+0.1
-0.2
motility
inner cut, R2A soft agar motility assay
+0.1
-0.6
-0.3
-0.0
-0.2
lb
LB
-0.5
+0.1
+0.1
-0.3
+0.1
stress
Aluminum chloride 2 mM
-0.6
+0.1
-0.3
+0.1
+0.1
pH
LB, pH10
-0.5
+0.3
-0.5
+0.0
+0.3
stress
Chlorite 0.1 mM
+0.1
-0.5
-0.3
+0.3
+0.0
motility
inner cut, R2A soft agar motility assay
+0.4
+0.1
-0.1
-0.3
-0.4
stress
Cisplatin 0.005 mg/ml
+0.3
+0.0
-0.3
+0.2
-0.2
carbon source
succinate (C)
-0.2
+0.2
+0.3
+0.2
-0.3
nitrogen source
L-Arginine (N)
-0.5
+0.4
+0.2
+0.2
+0.0
carbon source
pyruvate (C)
-0.1
+0.3
+0.2
+0.2
-0.3
carbon source
D-Lactate (C)
-0.4
+0.5
+0.2
+0.3
-0.1
carbon source
D-Galactose (C)
-0.3
+0.5
+0.1
+0.1
+0.1
nitrogen source
Ammonium chloride (N)
-0.5
+1.1
+0.1
+0.6
-0.4
carbon source
succinate (C)
-0.2
+0.6
+0.4
+0.2
-0.2
carbon source
D-Ribose (C)
+0.1
+0.3
+0.4
+0.3
-0.1
carbon source
a-Ketoglutaric (C)
+0.4
+0.4
+0.2
+0.2
-0.1
carbon source
D-Glucose (C)
+0.0
+0.4
+0.2
+0.4
+0.2
nitrogen source
L-Alanine (N)
-0.0
+0.7
+0.1
+0.3
+0.1
carbon source
D-Fructose (C)
+0.2
+0.5
+0.2
+0.2
+0.0
nitrogen source
Uridine (N)
-0.0
+1.5
+0.5
+0.6
-0.2
phage
phage 93.1
+0.0
+1.1
+0.8
+0.9
-0.3
phage
phage 93.1
+0.1
+1.3
+0.7
+0.7
-0.3
phage
phage 93.2
+0.2
+1.0
+0.9
+0.9
-0.1
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