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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1379 and Ac3H11_1380 are separated by 41 nucleotides
Ac3H11_1380 and Ac3H11_1381 are separated by 77 nucleotides
Ac3H11_1381 and Ac3H11_1382 are separated by 27 nucleotides
Ac3H11_1382 and Ac3H11_1383 overlap by 8 nucleotides
Ac3H11_1379 - Negative regulator of flagellin synthesis, at 68,343 to 68,666
_1379
Ac3H11_1380 - hypothetical protein, at 68,708 to 69,082
_1380
Ac3H11_1381 - RNA polymerase sigma factor for flagellar operon, at 69,160 to 69,876
_1381
Ac3H11_1382 - FIG00538194: hypothetical protein, at 69,904 to 70,701
_1382
Ac3H11_1383 - Flagellar biosynthesis protein FlhF, at 70,694 to 72,217
_1383
Group
Condition
Ac3H11
_1379
Ac3H11
_1380
Ac3H11
_1381
Ac3H11
_1382
Ac3H11
_1383
lb
LB
N.D.
-1.6
+0.1
-0.4
-0.1
nitrogen source
D-Alanine (N)
N.D.
-0.6
-0.7
-0.3
-0.3
lb
LB
N.D.
-1.0
-0.4
-0.5
+0.3
stress
Phosphomycin 0.02 mg/ml
N.D.
-1.1
+0.1
-0.5
-0.1
nitrogen source
L-Glutamine (N)
N.D.
-0.8
-0.7
-0.0
-0.0
carbon source
L-Arabinose (C)
N.D.
-1.1
-0.5
-0.1
+0.2
stress
Aluminum chloride 2 mM
N.D.
-0.6
-0.2
-0.6
+0.1
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-0.9
+0.2
-0.5
-0.1
lb
LB
N.D.
-1.0
-0.3
+0.3
-0.2
motility
inner cut, R2A soft agar motility assay
N.D.
-1.5
-0.1
+0.4
+0.1
nitrogen source
L-Arginine (N)
N.D.
-0.4
-0.5
-0.5
+0.4
stress
Cisplatin 0.0025 mg/ml
N.D.
-0.6
+0.3
-0.1
-0.5
carbon source
Tween 20 (C)
N.D.
-0.4
-0.3
-0.5
+0.2
nitrogen source
L-Isoleucine (N)
N.D.
-0.3
-0.9
+0.1
+0.3
stress
Fusidic 0.001 mg/ml
N.D.
-0.8
-0.1
+0.4
-0.0
carbon source
D-Galactose (C)
N.D.
+0.0
-0.5
-0.3
+0.5
nitrogen source
L-Proline (N)
N.D.
+0.5
-0.7
-0.1
+0.2
carbon source
D-Glucose (C)
N.D.
+0.3
-0.5
-0.2
+0.4
nitrogen source
Ammonium chloride (N)
N.D.
+0.6
-1.1
-0.5
+1.1
carbon source
succinate (C)
N.D.
+0.1
-0.3
-0.2
+0.6
nitrogen source
Uridine (N)
N.D.
-0.1
-1.2
-0.0
+1.5
stress
Sisomicin 0.001 mg/ml
N.D.
-0.6
+0.4
+0.4
+0.0
nitrogen source
L-Alanine (N)
N.D.
-0.6
+0.1
-0.0
+0.7
stress
syringaldehyde 2.5 mM
N.D.
+0.5
-0.7
+0.3
+0.1
carbon source
succinate (C)
N.D.
+0.5
+0.3
-0.3
-0.1
phage
phage 93.1
N.D.
-0.2
-0.4
+0.0
+1.1
carbon source
a-Ketoglutaric (C)
N.D.
+0.3
-0.4
+0.4
+0.4
phage
phage 93.1
N.D.
-0.5
-0.2
+0.1
+1.3
phage
phage 93.2
N.D.
+0.3
-0.4
+0.2
+1.0
carbon source
D-Lactate (C)
N.D.
+1.0
-0.0
-0.1
+0.3
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