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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1373 and Ac3H11_1374 are separated by 60 nucleotides
Ac3H11_1374 and Ac3H11_1375 are separated by 41 nucleotides
Ac3H11_1375 and Ac3H11_1376 are separated by 19 nucleotides
Ac3H11_1376 and Ac3H11_1377 are separated by 33 nucleotides
Ac3H11_1373 - Flagellar basal-body rod protein FlgF, at 63,540 to 64,280
_1373
Ac3H11_1374 - Flagellar hook protein FlgE, at 64,341 to 65,621
_1374
Ac3H11_1375 - Flagellar basal-body rod modification protein FlgD, at 65,663 to 66,319
_1375
Ac3H11_1376 - Flagellar basal-body rod protein FlgC, at 66,339 to 66,743
_1376
Ac3H11_1377 - Flagellar basal-body rod protein FlgB, at 66,777 to 67,238
_1377
Group
Condition
Ac3H11
_1373
Ac3H11
_1374
Ac3H11
_1375
Ac3H11
_1376
Ac3H11
_1377
stress
Zinc 1 mM
-0.6
+0.1
-0.4
-0.1
-0.7
stress
copper (II) chloride 2 mM
+0.1
-0.4
-0.5
-0.2
-0.1
stress
Phosphomycin 0.06 mg/ml
+0.3
+0.1
-0.2
-0.5
-0.6
stress
Paraquat dichloride 0.01 mg/ml
+0.3
+0.2
-0.1
+0.1
-1.2
motility
inner cut, R2A soft agar motility assay
+0.6
-0.2
+0.1
-0.2
-0.7
nitrogen source
L-Alanine (N)
-0.5
+0.1
-0.6
+0.3
+0.1
stress
copper (II) chloride 1 mM
-0.3
+0.3
+0.2
-0.3
-0.4
stress
nitrate 100 mM
+0.4
+0.1
-0.0
-0.3
-0.7
stress
Cisplatin 0.0025 mg/ml
+0.5
-0.3
-0.1
-0.0
-0.5
nitrogen source
Ammonium chloride (N)
+0.3
+0.3
-0.9
+0.3
-0.5
motility
inner cut, R2A soft agar motility assay
+0.8
-0.2
+0.2
-0.3
-0.6
stress
Bacitracin 0.032 mg/ml
+0.7
-0.2
+0.1
-0.4
-0.3
stress
Cisplatin 0.005 mg/ml
-0.7
+0.0
+0.8
-0.4
+0.5
stress
Bacitracin 0.008 mg/ml
+0.7
+0.2
-0.2
-0.3
+0.2
stress
Sisomicin 0.001 mg/ml
+0.6
-0.1
-0.4
-0.1
+0.7
stress
Cobalt chloride 0.4 mM
+0.6
+0.1
-0.4
+0.2
+0.4
nitrogen source
L-Threonine (N)
+0.3
-0.2
-0.0
+0.3
+0.5
carbon source
D-Glucose (C)
-0.3
+0.2
+0.5
+0.2
+0.3
carbon source
D-Lactate (C)
+0.1
-0.0
+0.6
+0.4
+0.3
nitrogen source
L-Isoleucine (N)
+0.3
+0.3
+0.6
+0.2
-0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
+0.1
+0.0
+0.3
+0.8
stress
syringaldehyde 2.5 mM
-0.0
+0.5
+0.3
+0.5
+0.3
nitrogen source
L-Leucine (N)
+0.5
-0.1
+0.1
+0.3
+0.8
carbon source
D-Gluconic Acid (C)
-0.1
+0.5
+0.5
+0.3
+0.3
carbon source
succinate (C)
+0.2
+0.2
+0.4
+0.2
+0.6
carbon source
D-Gluconic Acid (C)
+0.1
+0.5
+0.2
+0.5
+0.7
nitrogen source
Uridine (N)
+0.4
+0.4
-0.0
+0.6
+0.8
phage
phage 93.1
+0.7
+0.8
+0.4
+0.7
+0.6
phage
phage 93.1
+1.2
+0.6
-0.0
+0.6
+1.1
phage
phage 93.2
+1.5
+0.5
+0.7
+0.9
+0.4
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