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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1343 and Ac3H11_1344 are separated by 46 nucleotides
Ac3H11_1344 and Ac3H11_1345 are separated by 288 nucleotides
Ac3H11_1345 and Ac3H11_1346 are separated by 163 nucleotides
Ac3H11_1346 and Ac3H11_1347 are separated by 178 nucleotides
Ac3H11_1343 - PPO candidate 1, at 31,918 to 32,526
_1343
Ac3H11_1344 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 32,573 to 34,783
_1344
Ac3H11_1345 - putative exported protein, at 35,072 to 38,914
_1345
Ac3H11_1346 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 39,078 to 39,830
_1346
Ac3H11_1347 - hypothetical protein, at 40,009 to 40,308
_1347
Group
Condition
Ac3H11
_1343
Ac3H11
_1344
Ac3H11
_1345
Ac3H11
_1346
Ac3H11
_1347
stress
nitrate 100 mM
-0.1
N.D.
-0.2
-3.1
-0.1
phage
phage 93.1
-0.3
N.D.
-0.3
-1.1
-0.6
phage
phage 93.1
-0.4
N.D.
-0.3
-1.0
-0.3
motility
inner cut, R2A soft agar motility assay
+0.1
N.D.
-0.3
-1.2
-0.6
stress
Sisomicin 0.001 mg/ml
-0.0
N.D.
-0.2
-1.4
-0.3
stress
copper (II) chloride 2 mM
-0.2
N.D.
+0.0
-1.5
-0.1
nitrogen source
Uridine (N)
-0.0
N.D.
+0.1
-1.0
-0.4
stress
Phosphomycin 0.06 mg/ml
-0.3
N.D.
-0.0
-1.1
+0.2
nitrogen source
L-Leucine (N)
-0.0
N.D.
+0.1
-0.6
-0.7
stress
Sisomicin 0.004 mg/ml
-0.1
N.D.
-0.1
-1.0
+0.1
stress
Cobalt chloride 0.32 mM
+0.2
N.D.
+0.0
-1.0
-0.2
nitrogen source
L-Histidine (N)
+0.3
N.D.
+0.3
-1.3
-0.1
lb
LB
-0.0
N.D.
-0.1
-0.9
+0.2
nitrogen source
D-Alanine (N)
-0.0
N.D.
+0.0
-1.0
+0.3
carbon source
D-Gluconic Acid (C)
-0.2
N.D.
-0.3
+0.6
-0.2
carbon source
succinate (C)
-0.3
N.D.
-0.2
+1.1
-0.3
stress
Paraquat dichloride 0.01 mg/ml
-0.1
N.D.
-0.4
+0.5
+0.5
stress
D-Cycloserine 0.05 mg/ml
+0.4
N.D.
-0.3
-0.0
+0.5
stress
Chlorite 0.1 mM
+0.2
N.D.
-0.3
+0.7
+0.1
nitrogen source
L-Isoleucine (N)
-0.1
N.D.
-0.0
+1.1
-0.3
stress
Cobalt chloride 0.32 mM
+0.1
N.D.
-0.2
+0.9
+0.0
carbon source
D-Glucose (C)
-0.1
N.D.
-0.0
+0.9
+0.1
motility
inner cut, R2A soft agar motility assay
+0.3
N.D.
+0.1
-0.1
+0.7
pH
LB, pH6
+0.1
N.D.
-0.0
+1.2
-0.3
stress
Cisplatin 0.005 mg/ml
-0.4
N.D.
-0.2
+1.3
+0.5
carbon source
D-Ribose (C)
-0.1
N.D.
+0.0
+1.0
+0.3
nitrogen source
L-Alanine (N)
+0.5
N.D.
+0.1
+0.6
+0.2
lb
LB
-0.0
N.D.
+0.1
+0.9
+0.4
motility
inner cut, R2A soft agar motility assay
+0.2
N.D.
-0.2
+1.1
+0.4
carbon source
propionate (C)
+0.0
N.D.
-0.1
+1.7
+0.0
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