Fitness for 5 genes in Acidovorax sp. GW101-3H11

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500 ntAc3H11_1342 and Ac3H11_1343 are separated by 808 nucleotidesAc3H11_1343 and Ac3H11_1344 are separated by 46 nucleotidesAc3H11_1344 and Ac3H11_1345 are separated by 288 nucleotidesAc3H11_1345 and Ac3H11_1346 are separated by 163 nucleotides Ac3H11_1342 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 30,594 to 31,109 _1342 Ac3H11_1343 - PPO candidate 1, at 31,918 to 32,526 _1343 Ac3H11_1344 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 32,573 to 34,783 _1344 Ac3H11_1345 - putative exported protein, at 35,072 to 38,914 _1345 Ac3H11_1346 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 39,078 to 39,830 _1346
Group Condition Ac3H11_1342 Ac3H11_1343 Ac3H11_1344 Ac3H11_1345 Ac3H11_1346
stress nitrate 100 mM +0.1 -0.1 N.D. -0.2 -3.1
phage phage 93.1 -0.2 -0.4 N.D. -0.3 -1.0
phage phage 93.1 -0.1 -0.3 N.D. -0.3 -1.1
stress copper (II) chloride 2 mM -0.0 -0.2 N.D. +0.0 -1.5
stress Phosphomycin 0.06 mg/ml +0.0 -0.3 N.D. -0.0 -1.1
stress Sisomicin 0.001 mg/ml +0.2 -0.0 N.D. -0.2 -1.4
lb LB -0.1 -0.0 N.D. -0.1 -0.9
stress Sisomicin 0.004 mg/ml +0.1 -0.1 N.D. -0.1 -1.0
nitrogen source Uridine (N) +0.1 -0.0 N.D. +0.1 -1.0
nitrogen source L-Histidine (N) +0.0 +0.3 N.D. +0.3 -1.3
stress Cobalt chloride 0.32 mM -0.0 +0.2 N.D. +0.0 -1.0
stress Cobalt chloride 0.4 mM +0.3 -0.1 N.D. -0.2 -0.7
motility inner cut, R2A soft agar motility assay +0.7 +0.1 N.D. -0.3 -1.2
nitrogen source D-Alanine (N) +0.4 -0.0 N.D. +0.0 -1.0
stress Cisplatin 0.0025 mg/ml +0.3 -0.1 N.D. +0.2 -0.6
stress Paraquat dichloride 0.01 mg/ml +0.2 -0.1 N.D. -0.4 +0.5
carbon source a-Ketoglutaric (C) -0.4 -0.2 N.D. +0.0 +0.8
carbon source succinate (C) -0.1 -0.3 N.D. -0.2 +1.1
stress Cobalt chloride 0.32 mM -0.2 +0.1 N.D. -0.2 +0.9
stress Cisplatin 0.005 mg/ml -0.1 -0.4 N.D. -0.2 +1.3
carbon source D-Ribose (C) -0.1 -0.1 N.D. +0.0 +1.0
stress Chlorite 0.1 mM +0.5 +0.2 N.D. -0.3 +0.7
lb LB +0.1 -0.0 N.D. +0.1 +0.9
nitrogen source L-Isoleucine (N) +0.0 -0.1 N.D. -0.0 +1.1
stress nitrite 10 mM +0.4 -0.1 N.D. -0.0 +0.8
pH LB, pH6 -0.2 +0.1 N.D. -0.0 +1.2
motility inner cut, R2A soft agar motility assay +0.1 +0.2 N.D. -0.2 +1.1
nitrogen source Ammonium chloride (N) +0.4 +0.4 N.D. +0.2 +0.3
nitrogen source L-Alanine (N) +0.2 +0.5 N.D. +0.1 +0.6
carbon source propionate (C) -0.2 +0.0 N.D. -0.1 +1.7
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