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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1337 and Ac3H11_1338 are separated by 864 nucleotides
Ac3H11_1338 and Ac3H11_1339 are separated by 30 nucleotides
Ac3H11_1339 and Ac3H11_1340 overlap by 4 nucleotides
Ac3H11_1340 and Ac3H11_1341 are separated by 917 nucleotides
Ac3H11_1337 - Ferrous iron transport protein, at 25,700 to 26,038
_1337
Ac3H11_1338 - Mobile element protein, at 26,903 to 27,022
_1338
Ac3H11_1339 - Mobile element protein, at 27,053 to 27,376
_1339
Ac3H11_1340 - Mobile element protein, at 27,373 to 28,287
_1340
Ac3H11_1341 - O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48), at 29,205 to 30,533
_1341
Group
Condition
Ac3H11
_1337
Ac3H11
_1338
Ac3H11
_1339
Ac3H11
_1340
Ac3H11
_1341
stress
Cisplatin 0.0025 mg/ml
N.D.
N.D.
-5.0
-0.1
+0.1
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
-2.5
+0.2
+0.3
stress
Chlorite 0.1 mM
N.D.
N.D.
-1.5
-0.2
-0.1
carbon source
succinate (C)
N.D.
N.D.
-1.5
+0.0
-0.0
pH
LB, pH10
N.D.
N.D.
-1.5
+0.1
+0.0
carbon source
D-Lactate (C)
N.D.
N.D.
-1.4
+0.1
-0.0
stress
nitrite 10 mM
N.D.
N.D.
-1.4
+0.2
-0.1
carbon source
D,L-Lactate (C)
N.D.
N.D.
-1.0
-0.1
-0.2
stress
Phosphomycin 0.06 mg/ml
N.D.
N.D.
-1.1
-0.0
+0.1
nitrogen source
D-Alanine (N)
N.D.
N.D.
-0.9
-0.2
+0.1
nitrogen source
L-Alanine (N)
N.D.
N.D.
-1.1
-0.0
+0.2
carbon source
L-Asparagine (C)
N.D.
N.D.
-1.0
+0.0
+0.1
pH
LB, pH8
N.D.
N.D.
-0.9
-0.0
+0.2
nitrogen source
L-Threonine (N)
N.D.
N.D.
-0.8
-0.0
+0.3
lb
LB
N.D.
N.D.
-0.9
+0.1
+0.3
pH
LB, pH6
N.D.
N.D.
-0.7
+0.0
+0.3
motility
inner cut, R2A soft agar motility assay
N.D.
N.D.
-0.5
+0.4
+0.2
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
+0.8
-0.0
-0.3
carbon source
L-Malic (C)
N.D.
N.D.
+1.0
-0.2
-0.2
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
+1.0
-0.2
-0.0
stress
Paraquat dichloride 0.01 mg/ml
N.D.
N.D.
+1.1
-0.2
+0.0
temperature
LB 30C
N.D.
N.D.
+1.0
-0.0
-0.0
stress
Zinc 1 mM
N.D.
N.D.
+1.1
-0.0
+0.1
stress
Bacitracin 0.008 mg/ml
N.D.
N.D.
+0.9
+0.1
+0.2
stress
A22 0.025 mg/ml
N.D.
N.D.
+1.0
+0.0
+0.1
temperature
LB 23C
N.D.
N.D.
+1.1
-0.0
+0.1
lb
LB
N.D.
N.D.
+1.4
+0.0
+0.1
lb
LB
N.D.
N.D.
+1.4
-0.0
+0.1
nitrogen source
L-Leucine (N)
N.D.
N.D.
+1.3
+0.2
+0.3
motility
inner cut, R2A soft agar motility assay
N.D.
N.D.
+1.8
+0.2
-0.0
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