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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1335 and Ac3H11_1336 are separated by 14 nucleotides
Ac3H11_1336 and Ac3H11_1337 overlap by 4 nucleotides
Ac3H11_1337 and Ac3H11_1338 are separated by 864 nucleotides
Ac3H11_1338 and Ac3H11_1339 are separated by 30 nucleotides
Ac3H11_1335 - hypothetical protein, at 23,521 to 23,763
_1335
Ac3H11_1336 - Ferrous iron transport protein B, at 23,778 to 25,703
_1336
Ac3H11_1337 - Ferrous iron transport protein, at 25,700 to 26,038
_1337
Ac3H11_1338 - Mobile element protein, at 26,903 to 27,022
_1338
Ac3H11_1339 - Mobile element protein, at 27,053 to 27,376
_1339
Group
Condition
Ac3H11
_1335
Ac3H11
_1336
Ac3H11
_1337
Ac3H11
_1338
Ac3H11
_1339
stress
Cisplatin 0.0025 mg/ml
+1.1
+0.0
N.D.
N.D.
-5.0
nitrogen source
L-Isoleucine (N)
-0.3
+0.2
N.D.
N.D.
-2.5
stress
Aluminum chloride 4 mM
-1.2
-0.5
N.D.
N.D.
-0.1
stress
nitrite 10 mM
-0.3
+0.2
N.D.
N.D.
-1.4
nitrogen source
L-Alanine (N)
-0.6
+0.3
N.D.
N.D.
-1.1
stress
Chlorite 0.1 mM
+0.2
+0.0
N.D.
N.D.
-1.5
carbon source
succinate (C)
+0.3
-0.1
N.D.
N.D.
-1.5
nitrogen source
Uridine (N)
-0.7
+0.2
N.D.
N.D.
-0.5
carbon source
D-Lactate (C)
+0.5
+0.2
N.D.
N.D.
-1.4
lb
LB
-0.2
+0.5
N.D.
N.D.
-0.9
nitrogen source
L-Threonine (N)
-0.2
+0.5
N.D.
N.D.
-0.8
pH
LB, pH10
-0.0
+1.0
N.D.
N.D.
-1.5
carbon source
D,L-Lactate (C)
+0.6
-0.0
N.D.
N.D.
-1.0
carbon source
L-Asparagine (C)
+0.5
+0.1
N.D.
N.D.
-1.0
nitrogen source
D-Alanine (N)
-0.1
+0.7
N.D.
N.D.
-0.9
stress
5-Hydroxymethylfurfural 5 mM
+0.7
+0.2
N.D.
N.D.
-0.6
temperature
LB 30C
-0.4
-0.0
N.D.
N.D.
+1.0
temperature
LB 23C
-0.4
+0.0
N.D.
N.D.
+1.1
stress
Paraquat dichloride 0.01 mg/ml
-0.5
+0.2
N.D.
N.D.
+1.1
lb
LB
+1.1
+0.1
N.D.
N.D.
-0.3
phage
phage 93.2
+1.6
-0.2
N.D.
N.D.
-0.2
lb
LB
+0.1
-0.1
N.D.
N.D.
+1.4
carbon source
L-Lactate (C)
+1.1
+0.1
N.D.
N.D.
+0.5
stress
Bacitracin 0.008 mg/ml
+0.6
+0.1
N.D.
N.D.
+0.9
carbon source
a-Ketoglutaric (C)
+0.6
+0.0
N.D.
N.D.
+1.0
lb
LB
+0.1
+0.2
N.D.
N.D.
+1.4
carbon source
a-Ketoglutaric (C)
+0.8
+0.1
N.D.
N.D.
+0.8
nitrogen source
L-Leucine (N)
+0.2
+0.3
N.D.
N.D.
+1.3
motility
inner cut, R2A soft agar motility assay
-0.2
+0.2
N.D.
N.D.
+1.8
stress
Zinc 1 mM
+0.4
+0.6
N.D.
N.D.
+1.1
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