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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1293 and Ac3H11_1294 are separated by 169 nucleotides
Ac3H11_1294 and Ac3H11_1295 are separated by 108 nucleotides
Ac3H11_1295 and Ac3H11_1296 are separated by 20 nucleotides
Ac3H11_1296 and Ac3H11_1297 are separated by 281 nucleotides
Ac3H11_1293 - Transcriptional regulator, LysR family, at 108,680 to 109,663
_1293
Ac3H11_1294 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 109,833 to 110,744
_1294
Ac3H11_1295 - hypothetical protein, at 110,853 to 111,386
_1295
Ac3H11_1296 - FIG00794195: hypothetical protein, at 111,407 to 112,180
_1296
Ac3H11_1297 - Transcriptional regulator, DeoR family, at 112,462 to 113,487
_1297
Group
Condition
Ac3H11
_1293
Ac3H11
_1294
Ac3H11
_1295
Ac3H11
_1296
Ac3H11
_1297
nitrogen source
L-Alanine (N)
+0.4
-1.1
-4.9
+0.8
+0.2
nitrogen source
L-Histidine (N)
-0.1
-0.3
-0.8
-0.2
+0.1
nitrogen source
L-Isoleucine (N)
-0.1
-0.8
-0.8
+0.4
+0.3
nitrogen source
Ammonium chloride (N)
-0.5
-0.6
-0.8
+0.6
+0.5
stress
sodium fluoride 25 mM
-0.4
+0.0
-0.7
+0.2
+0.1
pH
LB, pH10
-0.1
-0.2
-0.6
+0.5
-0.4
nitrogen source
L-Threonine (N)
-0.1
-0.0
-0.8
-0.2
+0.3
stress
copper (II) chloride 1 mM
-0.0
-0.2
-1.1
+0.1
+0.4
lb
LB
-0.4
-0.6
+0.1
+0.3
-0.1
stress
Thallium(I) acetate 0.0006 mg/ml
-0.1
+0.2
-0.7
-0.1
+0.3
stress
copper (II) chloride 2 mM
-0.1
-0.6
-0.1
+0.5
-0.1
phage
phage 93.1
+0.1
-0.1
-0.6
+0.6
-0.3
stress
Sisomicin 0.0005 mg/ml
+0.1
-0.3
-0.5
+0.4
-0.0
motility
inner cut, R2A soft agar motility assay
+0.1
+0.7
-1.2
+0.4
-0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.4
+0.2
-1.0
+0.3
+0.2
stress
syringaldehyde 2.5 mM
-0.2
-0.1
+0.6
-0.3
+0.2
carbon source
propionate (C)
-0.0
-0.4
-0.2
+0.5
+0.3
stress
Paraquat dichloride 0.01 mg/ml
-0.5
+0.4
+0.7
-0.1
-0.1
stress
Bacitracin 0.016 mg/ml
+0.1
+0.4
+0.3
-0.5
+0.2
carbon source
D-Glucose (C)
+0.0
+0.1
-0.4
+0.3
+0.6
phage
phage 93.1
+0.3
+0.4
-0.4
+0.1
+0.3
stress
copper (II) chloride 1 mM
-0.1
-0.3
+0.5
+0.5
-0.1
carbon source
L-Arabinose (C)
+0.2
-0.3
-0.1
+0.5
+0.4
stress
Cobalt chloride 0.16 mM
+0.2
-0.1
-0.2
+0.4
+0.4
carbon source
a-Ketoglutaric (C)
-0.2
-0.2
+0.3
+0.5
+0.3
stress
Cisplatin 0.0025 mg/ml
+0.1
-0.8
+0.2
+0.8
+0.5
carbon source
D-Gluconic Acid (C)
-0.1
+0.6
-0.2
+0.2
+0.5
motility
inner cut, R2A soft agar motility assay
-0.5
+0.2
+1.5
+0.3
-0.6
carbon source
pyruvate (C)
+0.3
+0.1
-0.1
+0.7
+0.4
motility
inner cut, R2A soft agar motility assay
-0.1
+0.5
-0.1
+1.2
-0.1
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