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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1260 and Ac3H11_1261 are separated by 203 nucleotides
Ac3H11_1261 and Ac3H11_1262 are separated by 53 nucleotides
Ac3H11_1262 and Ac3H11_1263 are separated by 148 nucleotides
Ac3H11_1263 and Ac3H11_1264 are separated by 80 nucleotides
Ac3H11_1260 - Beta-lactamase class C family protein, at 78,640 to 79,749
_1260
Ac3H11_1261 - Sensory histidine kinase QseC, at 79,953 to 81,308
_1261
Ac3H11_1262 - probable two-component system response regulator, at 81,362 to 82,018
_1262
Ac3H11_1263 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 82,167 to 82,841
_1263
Ac3H11_1264 - Sensor protein basS/pmrB (EC 2.7.3.-), at 82,922 to 84,373
_1264
Group
Condition
Ac3H11
_1260
Ac3H11
_1261
Ac3H11
_1262
Ac3H11
_1263
Ac3H11
_1264
carbon source
D-Ribose (C)
+0.1
-0.8
-0.6
-0.6
-2.0
carbon source
D-Glucose (C)
+0.1
-0.1
-0.4
-1.5
-1.1
carbon source
D-Glucose (C)
+0.2
-0.2
-0.5
-1.4
-0.9
carbon source
D-Ribose (C)
+0.0
-0.3
+0.1
-0.6
-2.1
carbon source
D-Gluconic Acid (C)
+0.1
-0.5
-1.0
+0.5
-1.1
carbon source
L-Arabinose (C)
+0.1
-0.0
-0.2
-0.9
-0.6
carbon source
L-Arabinose (C)
+0.1
-0.2
+0.0
-1.0
-0.6
carbon source
a-Ketoglutaric (C)
+0.3
-0.8
-1.2
+0.5
-0.5
carbon source
D-Galactose (C)
-0.1
+0.3
-0.9
-0.5
-0.2
carbon source
D-Fructose (C)
+0.1
-1.0
-0.3
-0.1
+0.1
lb
LB
+0.2
-0.5
-1.0
+0.4
-0.1
carbon source
L-Arabinose (C)
-0.1
+0.2
+0.4
-1.0
-0.5
carbon source
pyruvate (C)
+0.1
-0.4
-0.7
-0.2
+0.5
stress
Cobalt chloride 0.32 mM
+0.0
+0.1
-1.4
+0.7
+0.0
stress
Cobalt chloride 0.16 mM
+0.0
-0.6
-0.2
+0.6
-0.3
carbon source
D-Gluconic Acid (C)
+0.3
+0.3
-0.6
+0.3
-0.9
nitrogen source
L-Arginine (N)
+0.1
-0.6
+0.7
-0.4
-0.2
stress
Sisomicin 0.0005 mg/ml
+0.0
+0.4
-1.0
+0.2
+0.1
nitrogen source
L-Threonine (N)
-0.0
+0.8
+0.1
-0.7
-0.1
nitrogen source
L-Alanine (N)
-0.4
-0.2
+1.5
-0.4
+0.2
stress
Nickel (II) chloride 0.8 mM
-0.4
+0.9
+0.2
-0.0
+0.1
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.8
-0.1
+0.3
+0.3
stress
Cisplatin 0.0025 mg/ml
+0.2
+0.7
-0.2
+0.4
+0.1
stress
perchlorate 25 mM
-0.2
+0.8
+0.6
+0.1
-0.1
stress
Tetracycline 0.00005 mg/ml
-0.1
+0.9
+0.6
-0.1
-0.0
nitrogen source
Ammonium chloride (N)
+0.1
+0.5
+1.8
-0.5
-0.6
stress
D-Cycloserine 0.05 mg/ml
+0.3
+0.9
-0.1
+0.0
+0.2
pH
LB, pH10
+0.5
+0.3
+1.1
+0.1
+0.1
stress
perchlorate 10 mM
+0.0
+1.0
+0.9
+0.1
+0.1
motility
inner cut, R2A soft agar motility assay
-0.0
+1.3
+0.7
+0.4
+0.1
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