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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1258 and Ac3H11_1259 are separated by 254 nucleotides
Ac3H11_1259 and Ac3H11_1260 are separated by 24 nucleotides
Ac3H11_1260 and Ac3H11_1261 are separated by 203 nucleotides
Ac3H11_1261 and Ac3H11_1262 are separated by 53 nucleotides
Ac3H11_1258 - Tricarboxylate transport protein TctC, at 76,463 to 77,428
_1258
Ac3H11_1259 - N-formylglutamate deformylase (EC 3.5.1.68), at 77,683 to 78,615
_1259
Ac3H11_1260 - Beta-lactamase class C family protein, at 78,640 to 79,749
_1260
Ac3H11_1261 - Sensory histidine kinase QseC, at 79,953 to 81,308
_1261
Ac3H11_1262 - probable two-component system response regulator, at 81,362 to 82,018
_1262
Group
Condition
Ac3H11
_1258
Ac3H11
_1259
Ac3H11
_1260
Ac3H11
_1261
Ac3H11
_1262
lb
LB
-0.5
+0.1
+0.2
-0.5
-1.0
stress
Cobalt chloride 0.32 mM
+0.0
-0.2
+0.0
+0.1
-1.4
carbon source
a-Ketoglutaric (C)
+0.3
-0.1
+0.3
-0.8
-1.2
carbon source
D-Ribose (C)
+0.3
-0.2
+0.1
-0.8
-0.6
carbon source
D-Gluconic Acid (C)
+0.3
-0.2
+0.1
-0.5
-1.0
carbon source
pyruvate (C)
-0.0
-0.1
+0.1
-0.4
-0.7
carbon source
a-Ketoglutaric (C)
+0.1
-0.1
-0.2
-0.9
-0.1
carbon source
D-Fructose (C)
+0.0
+0.1
+0.1
-1.0
-0.3
stress
Phosphomycin 0.02 mg/ml
-0.2
+0.0
-0.0
+0.2
-1.0
stress
Bacitracin 0.008 mg/ml
-0.1
+0.0
-0.2
-0.8
+0.2
stress
Sisomicin 0.0005 mg/ml
-0.0
+0.1
+0.0
+0.4
-1.0
carbon source
D-Galactose (C)
+0.2
+0.0
-0.1
+0.3
-0.9
carbon source
L-Lactate (C)
-0.0
+0.2
+0.3
-0.4
-0.4
stress
Phosphomycin 0.06 mg/ml
-0.3
+0.2
-0.2
+0.5
-0.4
nitrogen source
L-Arginine (N)
-0.0
+0.2
+0.1
-0.6
+0.7
nitrogen source
D-Alanine (N)
-0.2
+0.3
+0.2
-0.3
+0.4
stress
Paraquat dichloride 0.01 mg/ml
-0.2
+0.3
-0.2
+0.8
-0.1
stress
Nickel (II) chloride 0.8 mM
+0.1
-0.1
-0.4
+0.9
+0.2
pH
LB, pH6
+0.1
-0.1
+0.2
-0.2
+0.8
stress
nitrite 10 mM
-0.1
+0.0
+0.1
+0.6
+0.5
nitrogen source
L-tyrosine (N)
-0.1
+0.0
+0.1
+0.5
+0.7
stress
D-Cycloserine 0.05 mg/ml
+0.3
-0.3
+0.3
+0.9
-0.1
stress
perchlorate 25 mM
+0.0
+0.1
-0.2
+0.8
+0.6
nitrogen source
L-Alanine (N)
+0.1
+0.3
-0.4
-0.2
+1.5
stress
Tetracycline 0.00005 mg/ml
+0.0
-0.1
-0.1
+0.9
+0.6
stress
Thallium(I) acetate 0.0006 mg/ml
+0.1
+0.1
+0.0
+0.5
+0.9
stress
perchlorate 10 mM
-0.2
+0.1
+0.0
+1.0
+0.9
pH
LB, pH10
+0.1
+0.0
+0.5
+0.3
+1.1
nitrogen source
Ammonium chloride (N)
+0.0
+0.2
+0.1
+0.5
+1.8
motility
inner cut, R2A soft agar motility assay
+0.6
+0.2
-0.0
+1.3
+0.7
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