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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1233 and Ac3H11_1234 are separated by 127 nucleotides
Ac3H11_1234 and Ac3H11_1235 are separated by 54 nucleotides
Ac3H11_1235 and Ac3H11_1236 are separated by 481 nucleotides
Ac3H11_1236 and Ac3H11_1237 are separated by 64 nucleotides
Ac3H11_1233 - YaeQ protein, at 51,149 to 51,709
_1233
Ac3H11_1234 - FIG00932085: hypothetical protein, at 51,837 to 52,142
_1234
Ac3H11_1235 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 52,197 to 52,631
_1235
Ac3H11_1236 - Membrane protein TerC, possibly involved in tellurium resistance, at 53,113 to 53,865
_1236
Ac3H11_1237 - FIG00537205: hypothetical protein, at 53,930 to 54,397
_1237
Group
Condition
Ac3H11
_1233
Ac3H11
_1234
Ac3H11
_1235
Ac3H11
_1236
Ac3H11
_1237
pH
LB, pH10
-0.2
-0.5
-0.9
-0.2
-0.5
carbon source
pyruvate (C)
-0.1
-0.8
-0.5
-0.1
-0.5
pH
LB, pH10
-0.4
-0.3
+0.2
-0.4
-1.0
carbon source
a-Ketoglutaric (C)
+0.3
-0.7
+0.2
-1.3
-0.4
pH
LB, pH9
-0.2
-0.3
-0.3
-0.8
-0.2
stress
Sisomicin 0.0005 mg/ml
-0.5
-1.0
-0.1
-0.3
+0.2
carbon source
D-Fructose (C)
+0.0
-1.0
-0.1
-0.1
-0.4
carbon source
a-Ketoglutaric (C)
-0.4
+0.2
-0.3
-0.6
-0.3
carbon source
D-Ribose (C)
-0.3
-0.5
+0.1
-0.2
-0.4
stress
Cisplatin 0.005 mg/ml
-0.1
-0.8
-1.2
-0.3
+1.2
stress
copper (II) chloride 2 mM
+0.3
-0.9
-0.1
+0.1
-0.5
carbon source
succinate (C)
+0.3
-0.3
-0.7
-0.4
+0.1
carbon source
D-Galactose (C)
+0.2
-0.5
+0.2
-0.6
-0.2
stress
Paraquat dichloride 0.01 mg/ml
+0.0
-0.1
-0.3
+0.4
-0.8
nitrogen source
L-Alanine (N)
+0.3
-0.6
+0.8
-0.8
-0.2
stress
Cisplatin 0.0025 mg/ml
+0.5
-0.7
-0.7
-0.0
+0.3
stress
Zinc 1 mM
+0.2
-0.9
-0.2
-0.0
+0.4
nitrogen source
Ammonium chloride (N)
+0.1
-1.0
+1.3
-0.5
-0.4
nitrogen source
L-Leucine (N)
-0.0
-0.4
+0.4
+0.3
-0.7
lb
LB
+0.3
-0.0
-1.0
+0.1
+0.4
nitrogen source
Uridine (N)
+0.1
-0.7
+0.6
+0.2
-0.4
nitrogen source
D-Alanine (N)
-0.7
-0.1
+0.5
-0.1
+0.5
stress
Bacitracin 0.032 mg/ml
-0.6
+0.5
-0.1
+0.5
-0.1
motility
inner cut, R2A soft agar motility assay
+0.7
-0.4
+0.1
-0.2
+0.2
stress
nitrate 45 mM
+0.5
+0.6
-0.3
-0.2
-0.1
stress
Cobalt chloride 0.4 mM
-0.3
+0.7
+0.2
+0.3
-0.2
nitrogen source
L-Histidine (N)
+0.3
-0.5
+0.6
-0.1
+0.6
phage
phage 93.2
+0.7
-0.2
+0.2
+0.2
+0.3
stress
Fusidic 0.001 mg/ml
+0.4
+0.6
+0.3
-0.0
+0.4
nitrogen source
L-Threonine (N)
-0.1
+0.5
+1.2
+0.1
+0.1
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