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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1227 and Ac3H11_1228 are separated by 73 nucleotides
Ac3H11_1228 and Ac3H11_1229 are separated by 23 nucleotides
Ac3H11_1229 and Ac3H11_1230 are separated by 179 nucleotides
Ac3H11_1230 and Ac3H11_1231 are separated by 68 nucleotides
Ac3H11_1227 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 44,920 to 45,924
_1227
Ac3H11_1228 - TRAP-type C4-dicarboxylate transport system, large permease component, at 45,998 to 47,278
_1228
Ac3H11_1229 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 47,302 to 47,889
_1229
Ac3H11_1230 - Transcriptional regulator, TetR family, at 48,069 to 48,785
_1230
Ac3H11_1231 - Glutathione S-transferase family protein, at 48,854 to 49,468
_1231
Group
Condition
Ac3H11
_1227
Ac3H11
_1228
Ac3H11
_1229
Ac3H11
_1230
Ac3H11
_1231
nitrogen source
L-Phenylalanine (N)
-0.2
-0.1
-0.3
-3.8
-0.3
stress
Chlorite 0.1 mM
-0.1
-0.2
-0.3
-0.3
-1.1
stress
Tetracycline 0.0001 mg/ml
-0.1
-0.0
-0.0
-0.1
-1.2
stress
copper (II) chloride 1 mM
-0.2
-0.1
-0.3
-0.4
-0.4
nitrogen source
Uridine (N)
-0.3
+0.3
-0.2
-0.4
-0.7
lb
LB
+0.2
-0.3
+0.0
+0.1
-1.1
nitrogen source
L-Leucine (N)
+0.2
+0.3
-0.4
-1.2
+0.1
stress
perchlorate 10 mM
-0.1
+0.4
-0.3
-0.1
-0.9
nitrogen source
L-Histidine (N)
-0.2
+0.0
-0.2
-0.9
+0.3
carbon source
D-Glucose (C)
+0.0
+0.1
-0.0
-1.2
+0.2
carbon source
D-Gluconic Acid (C)
+0.1
-0.2
-0.2
-1.6
+1.1
carbon source
D-Glucose (C)
-0.1
-0.0
-0.2
-1.2
+0.8
stress
Dimethyl Sulfoxide 6 vol%
+0.1
-0.5
+0.3
+0.2
-0.4
carbon source
D-Ribose (C)
+0.1
-0.2
+0.0
-0.8
+0.5
phage
phage 93.2
-0.0
-0.7
-0.3
+1.1
-0.5
carbon source
a-Ketoglutaric (C)
+0.1
-0.3
-0.0
-0.8
+0.7
carbon source
pyruvate (C)
+0.0
+0.2
-0.1
-1.1
+0.8
carbon source
pyruvate (C)
-0.0
+0.2
-0.0
-1.1
+1.0
carbon source
succinate (C)
+0.2
+0.4
-0.3
-0.4
+0.3
carbon source
D-Gluconic Acid (C)
-0.2
+0.2
-0.1
-0.9
+1.4
nitrogen source
D-Alanine (N)
-0.2
-0.0
+0.2
-0.1
+0.7
stress
Nickel (II) chloride 0.8 mM
-0.2
-0.1
+0.6
-0.0
+0.5
nitrogen source
Ammonium chloride (N)
-0.1
+0.4
+0.0
-0.9
+1.6
carbon source
L-Malic (C)
+0.1
+0.1
+0.2
-0.3
+0.9
phage
phage 93.1
-0.1
+0.0
+0.2
+1.5
-0.6
carbon source
a-Ketoglutaric (C)
+0.1
+0.3
+0.4
-0.6
+1.1
carbon source
succinate (C)
+0.2
+0.3
+0.2
-0.3
+1.0
stress
copper (II) chloride 2 mM
+0.1
+0.5
+0.8
+0.3
-0.3
carbon source
succinate (C)
+0.3
+0.0
+0.4
-0.1
+0.7
phage
phage 93.1
+0.0
+0.2
+0.1
+1.9
-0.0
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