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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1220 and Ac3H11_1221 are separated by 20 nucleotides
Ac3H11_1221 and Ac3H11_1222 are separated by 14 nucleotides
Ac3H11_1222 and Ac3H11_1223 are separated by 6 nucleotides
Ac3H11_1223 and Ac3H11_1224 are separated by 18 nucleotides
Ac3H11_1220 - FIG097052: Sugar transporter, at 38,965 to 40,248
_1220
Ac3H11_1221 - FIG002577: Putative lipoprotein precursor, at 40,269 to 40,808
_1221
Ac3H11_1222 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 40,823 to 41,587
_1222
Ac3H11_1223 - FIG002994: Putative transcriptional regulator, at 41,594 to 42,049
_1223
Ac3H11_1224 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 42,068 to 42,973
_1224
Group
Condition
Ac3H11
_1220
Ac3H11
_1221
Ac3H11
_1222
Ac3H11
_1223
Ac3H11
_1224
nitrogen source
L-Arginine (N)
+0.0
-0.1
-0.1
-1.3
-0.2
pH
LB, pH10
+0.3
+0.2
-0.4
-1.4
+0.1
stress
nitrite 10 mM
-0.4
-0.3
-0.2
-0.4
+0.0
carbon source
propionate (C)
-0.1
-0.2
-0.1
-0.8
+0.1
motility
inner cut, R2A soft agar motility assay
+0.1
-0.5
-0.6
-0.2
+0.2
stress
perchlorate 25 mM
+0.1
+0.0
-0.2
-1.1
+0.3
stress
Aluminum chloride 2 mM
+0.3
-0.0
-0.3
-0.4
-0.3
lb
LB
+0.2
-0.3
-0.1
-0.3
-0.3
phage
phage 93.1
-0.1
+0.0
-0.3
-0.7
+0.4
nitrogen source
L-Threonine (N)
-0.4
+0.2
-0.4
+0.3
-0.3
stress
Sisomicin 0.001 mg/ml
+0.1
-0.3
+0.2
-0.2
-0.4
stress
Cisplatin 0.005 mg/ml
-0.2
+0.1
+0.1
-0.6
+0.3
pH
LB, pH10
-0.2
-0.3
+0.0
+0.5
-0.3
lb
LB
+0.4
-0.1
-0.1
-0.5
+0.1
nitrogen source
L-Isoleucine (N)
-0.4
-0.2
+0.2
-0.1
+0.4
stress
Nickel (II) chloride 0.6 mM
+0.5
-0.2
-0.1
-0.3
+0.2
carbon source
D-Lactate (C)
+0.2
-0.0
-0.5
+0.4
+0.1
motility
inner cut, R2A soft agar motility assay
-0.2
-0.2
+0.3
+0.7
-0.5
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.0
-0.6
+0.5
+0.4
stress
D-Cycloserine 0.05 mg/ml
+0.1
+0.1
-0.5
+1.0
-0.3
carbon source
a-Ketoglutaric (C)
+0.3
-0.3
+0.1
+0.3
-0.1
stress
Cobalt chloride 0.32 mM
+0.4
-0.2
+0.1
+0.3
-0.3
stress
Bacitracin 0.032 mg/ml
+0.5
-0.1
+0.3
-0.4
+0.1
nitrogen source
D-Alanine (N)
-0.7
+0.1
+0.3
+0.8
-0.0
stress
Chlorite 0.1 mM
-0.1
+0.1
-0.2
+0.7
+0.2
stress
nitrate 100 mM
+0.3
-0.3
+0.2
+0.1
+0.7
stress
Bacitracin 0.016 mg/ml
+0.4
-0.1
+0.1
+0.7
-0.1
stress
copper (II) chloride 2 mM
+0.7
-0.1
-0.0
+1.1
-0.5
lb
LB
+0.0
+0.2
+0.1
+0.5
+0.4
stress
Paraquat dichloride 0.01 mg/ml
+1.0
+0.3
-0.2
+0.3
+0.4
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