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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1208 and Ac3H11_1209 are separated by 89 nucleotides
Ac3H11_1209 and Ac3H11_1210 are separated by 118 nucleotides
Ac3H11_1210 and Ac3H11_1211 overlap by 4 nucleotides
Ac3H11_1211 and Ac3H11_1212 are separated by 72 nucleotides
Ac3H11_1208 - FIG005080: Possible exported protein, at 18,872 to 23,020
_1208
Ac3H11_1209 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 23,110 to 25,875
_1209
Ac3H11_1210 - transcriptional regulator, TetR family, at 25,994 to 26,725
_1210
Ac3H11_1211 - Outer membrane protein assembly factor YaeT precursor, at 26,722 to 28,170
_1211
Ac3H11_1212 - Secretion protein HlyD precursor, at 28,243 to 29,454
_1212
Group
Condition
Ac3H11
_1208
Ac3H11
_1209
Ac3H11
_1210
Ac3H11
_1211
Ac3H11
_1212
stress
Bacitracin 0.032 mg/ml
-1.0
-1.9
-1.6
-0.5
+0.1
pH
LB, pH10
-2.8
-0.8
-0.7
-0.1
+0.6
pH
LB, pH10
-2.6
-0.5
-0.6
-0.1
+0.1
stress
Cobalt chloride 0.4 mM
-1.8
-0.7
-0.5
-0.7
+0.1
stress
Cobalt chloride 0.32 mM
-2.5
-0.2
-0.5
+0.2
+0.0
carbon source
Tween 20 (C)
+0.3
-0.2
-0.2
-1.4
-1.7
nitrogen source
L-tyrosine (N)
-3.1
+0.4
-0.0
-0.1
+0.1
motility
inner cut, R2A soft agar motility assay
-1.5
-1.7
-0.2
+0.4
+0.6
lb
LB
+1.5
-2.0
-0.4
-0.6
-0.4
stress
Paraquat dichloride 0.01 mg/ml
+1.9
-1.9
-0.7
-0.7
-0.4
stress
Zinc 1 mM
+1.1
-1.3
-0.6
-0.7
-0.2
stress
Chlorite 0.1 mM
+1.7
-2.4
+0.0
-0.5
-0.2
stress
perchlorate 10 mM
+1.5
-1.0
-0.5
-0.6
-0.6
stress
Fusidic 0.001 mg/ml
+1.6
-1.9
-0.8
-0.0
-0.0
stress
Bacitracin 0.008 mg/ml
+0.8
-2.0
-0.3
+0.4
+0.2
lb
LB
+1.7
-1.5
+0.0
-0.9
-0.1
lb
LB
+1.7
-1.4
-0.1
-0.5
-0.5
stress
Phosphomycin 0.06 mg/ml
+1.7
-1.2
-0.3
-0.8
+0.0
stress
Nickel (II) chloride 0.6 mM
+2.1
-2.0
+0.2
-0.3
-0.5
stress
Phosphomycin 0.02 mg/ml
+1.6
-1.3
-0.3
-0.4
-0.1
stress
Sisomicin 0.001 mg/ml
+1.6
-1.5
+0.0
-0.3
-0.3
stress
Cisplatin 0.0025 mg/ml
+1.7
-1.5
+0.0
+0.1
-0.6
stress
copper (II) chloride 1 mM
+1.8
-1.2
-0.2
-0.7
-0.0
stress
Cobalt chloride 0.32 mM
+1.8
-0.9
-0.2
-0.6
-0.1
stress
Aluminum chloride 2 mM
+1.6
-1.2
-0.4
+0.2
-0.2
carbon source
pyruvate (C)
+2.0
+0.1
-0.8
-1.0
-0.1
carbon source
D-Gluconic Acid (C)
+3.0
-0.2
-0.3
-1.2
-0.4
carbon source
D-Gluconic Acid (C)
+3.2
-0.5
-0.6
-0.5
-0.1
carbon source
a-Ketoglutaric (C)
+3.5
-0.2
+0.2
-0.4
-0.4
carbon source
a-Ketoglutaric (C)
+3.0
-0.5
+0.1
+0.0
+0.2
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