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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1175 and Ac3H11_1176 are separated by 3 nucleotides
Ac3H11_1176 and Ac3H11_1177 are separated by 112 nucleotides
Ac3H11_1177 and Ac3H11_1178 overlap by 4 nucleotides
Ac3H11_1178 and Ac3H11_1179 are separated by 9 nucleotides
Ac3H11_1175 - hypothetical protein, at 13,577 to 13,795
_1175
Ac3H11_1176 - TRAP transporter solute receptor, unknown substrate 3, at 13,799 to 14,836
_1176
Ac3H11_1177 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 14,949 to 15,431
_1177
Ac3H11_1178 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 15,428 to 16,747
_1178
Ac3H11_1179 - putative exported protein, at 16,757 to 17,734
_1179
Group
Condition
Ac3H11
_1175
Ac3H11
_1176
Ac3H11
_1177
Ac3H11
_1178
Ac3H11
_1179
stress
Cisplatin 0.0025 mg/ml
-2.0
+0.3
-0.9
-0.7
N.D.
stress
copper (II) chloride 1 mM
-1.6
-0.7
-0.4
+0.2
N.D.
nitrogen source
Ammonium chloride (N)
-2.2
-0.3
-0.6
+0.8
N.D.
nitrogen source
L-Leucine (N)
-1.3
-0.2
-0.5
-0.0
N.D.
stress
Sisomicin 0.001 mg/ml
-0.9
-0.4
-0.3
-0.4
N.D.
carbon source
succinate (C)
-1.6
-0.2
-0.2
+0.1
N.D.
lb
LB
-0.5
+0.2
-1.3
+0.0
N.D.
carbon source
L-Lactate (C)
-1.2
-0.1
-0.4
+0.0
N.D.
stress
Paraquat dichloride 0.01 mg/ml
-2.0
+0.4
-0.3
+0.2
N.D.
carbon source
D-Lactate (C)
-0.7
-0.3
-0.0
-0.4
N.D.
stress
Cobalt chloride 0.32 mM
-1.1
-0.3
+0.0
+0.0
N.D.
stress
A22 0.025 mg/ml
-1.2
-0.4
+0.1
+0.1
N.D.
stress
syringaldehyde 2.5 mM
-1.0
-0.3
+0.0
+0.2
N.D.
stress
Phosphomycin 0.06 mg/ml
-0.3
-1.0
+0.2
-0.1
N.D.
carbon source
a-Ketoglutaric (C)
-1.1
-0.1
+0.6
-0.2
N.D.
carbon source
D-Sorbitol (C)
+0.3
-0.4
-0.7
+0.1
N.D.
stress
Fusidic 0.001 mg/ml
-1.6
+0.7
+0.3
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
+0.5
-0.8
+0.1
-0.2
N.D.
carbon source
D,L-Lactate (C)
-0.9
+0.1
+0.3
+0.1
N.D.
stress
perchlorate 10 mM
+0.9
-0.3
-0.5
-0.1
N.D.
stress
Aluminum chloride 4 mM
+1.0
-0.3
-0.6
-0.0
N.D.
nitrogen source
L-Serine (N)
+0.8
-0.3
-0.2
-0.2
N.D.
stress
Nickel (II) chloride 0.6 mM
+1.3
-0.3
-0.3
-0.2
N.D.
stress
Chloramphenicol 0.001 mg/ml
+1.5
-0.5
-0.1
-0.0
N.D.
motility
inner cut, R2A soft agar motility assay
+1.2
+0.1
-0.1
-0.2
N.D.
stress
Cisplatin 0.005 mg/ml
+1.6
+0.5
-0.6
-0.4
N.D.
nitrogen source
D-Alanine (N)
+1.0
+0.4
+0.2
-0.2
N.D.
lb
LB
+2.3
-0.5
-0.4
+0.1
N.D.
stress
Tetracycline 0.0001 mg/ml
+2.2
+0.1
+0.1
-0.2
N.D.
nitrogen source
L-Alanine (N)
+1.7
+0.7
+0.1
+0.1
N.D.
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