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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1154 and Ac3H11_1155 are separated by 185 nucleotides
Ac3H11_1155 and Ac3H11_1156 are separated by 254 nucleotides
Ac3H11_1156 and Ac3H11_1157 are separated by 142 nucleotides
Ac3H11_1157 and Ac3H11_1158 are separated by 88 nucleotides
Ac3H11_1154 - hypothetical protein, at 105,043 to 105,876
_1154
Ac3H11_1155 - hypothetical protein, at 106,062 to 108,068
_1155
Ac3H11_1156 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11), at 108,323 to 109,219
_1156
Ac3H11_1157 - Kynureninase (EC 3.7.1.3), at 109,362 to 110,672
_1157
Ac3H11_1158 - Kynurenine formamidase, bacterial (EC 3.5.1.9), at 110,761 to 111,414
_1158
Group
Condition
Ac3H11
_1154
Ac3H11
_1155
Ac3H11
_1156
Ac3H11
_1157
Ac3H11
_1158
stress
Cobalt chloride 0.32 mM
N.D.
-0.6
-0.4
+0.1
-0.1
pH
LB, pH10
N.D.
-0.4
+0.1
+0.3
-0.7
stress
syringaldehyde 2.5 mM
N.D.
-0.1
-0.2
-0.5
+0.1
stress
sodium fluoride 20 mM
N.D.
-0.5
+0.1
-0.1
-0.1
stress
perchlorate 10 mM
N.D.
-0.3
-0.1
-0.4
+0.2
stress
sodium fluoride 35 mM
N.D.
-0.2
-0.1
-0.4
+0.2
stress
Nickel (II) chloride 0.6 mM
N.D.
-0.4
+0.1
+0.2
-0.2
lb
LB
N.D.
-0.7
-0.0
+0.0
+0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
-0.6
-0.1
+0.3
+0.1
stress
Phosphomycin 0.06 mg/ml
N.D.
-0.6
-0.3
+0.0
+0.6
stress
Bacitracin 0.008 mg/ml
N.D.
-0.6
+0.1
-0.2
+0.4
lb
LB
N.D.
-0.5
+0.0
+0.0
+0.3
stress
Paraquat dichloride 0.01 mg/ml
N.D.
-0.2
+0.2
-0.4
+0.3
nitrogen source
D-Alanine (N)
N.D.
+0.0
-0.5
+0.2
+0.1
stress
Chlorite 0.1 mM
N.D.
-0.5
+0.3
-0.0
+0.2
stress
Cisplatin 0.0025 mg/ml
N.D.
-0.6
+0.2
+0.2
+0.2
stress
copper (II) chloride 1 mM
N.D.
-0.4
+0.1
+0.1
+0.3
stress
sodium fluoride 25 mM
N.D.
-0.3
+0.3
+0.2
+0.0
carbon source
L-Lactate (C)
N.D.
+0.1
+0.1
+0.3
-0.3
nitrogen source
L-Alanine (N)
N.D.
+0.5
-0.4
+0.2
-0.0
carbon source
D-Fructose (C)
N.D.
-0.1
+0.2
+0.5
-0.2
stress
Cobalt chloride 0.4 mM
N.D.
+0.2
+0.4
-0.4
+0.2
nitrogen source
Ammonium chloride (N)
N.D.
+0.6
-0.5
+0.3
+0.2
stress
Sisomicin 0.001 mg/ml
N.D.
-0.2
+0.2
-0.0
+0.5
nitrogen source
L-Isoleucine (N)
N.D.
+0.1
+0.4
-0.1
+0.1
carbon source
D-Ribose (C)
N.D.
-0.1
+0.0
+0.3
+0.4
carbon source
D-Glucose (C)
N.D.
+0.3
+0.1
+0.2
+0.2
lb
LB
N.D.
+0.1
+0.2
+0.2
+0.5
motility
inner cut, R2A soft agar motility assay
N.D.
+0.3
+0.4
+0.2
+0.2
motility
inner cut, R2A soft agar motility assay
N.D.
+0.4
+0.2
+0.1
+0.4
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