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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1150 and Ac3H11_1151 are separated by 618 nucleotides
Ac3H11_1151 and Ac3H11_1152 overlap by 2 nucleotides
Ac3H11_1152 and Ac3H11_1153 are separated by 109 nucleotides
Ac3H11_1153 and Ac3H11_1154 overlap by 17 nucleotides
Ac3H11_1150 - Major facilitator family transporter, at 102,160 to 103,407
_1150
Ac3H11_1151 - hypothetical protein, at 104,026 to 104,154
_1151
Ac3H11_1152 - hypothetical protein, at 104,153 to 104,401
_1152
Ac3H11_1153 - hypothetical protein, at 104,511 to 105,059
_1153
Ac3H11_1154 - hypothetical protein, at 105,043 to 105,876
_1154
Group
Condition
Ac3H11
_1150
Ac3H11
_1151
Ac3H11
_1152
Ac3H11
_1153
Ac3H11
_1154
stress
sodium fluoride 25 mM
-0.1
N.D.
-0.6
N.D.
N.D.
stress
Nickel (II) chloride 0.6 mM
-0.1
N.D.
-0.5
N.D.
N.D.
pH
LB, pH10
-0.4
N.D.
-0.2
N.D.
N.D.
carbon source
L-Arabinose (C)
+0.1
N.D.
-0.6
N.D.
N.D.
temperature
LB 23C
-0.1
N.D.
-0.5
N.D.
N.D.
carbon source
D-Fructose (C)
+0.0
N.D.
-0.6
N.D.
N.D.
carbon source
D-Ribose (C)
+0.1
N.D.
-0.5
N.D.
N.D.
stress
Sisomicin 0.001 mg/ml
+0.2
N.D.
-0.5
N.D.
N.D.
stress
Cisplatin 0.005 mg/ml
+0.2
N.D.
-0.5
N.D.
N.D.
stress
copper (II) chloride 2 mM
-0.4
N.D.
+0.3
N.D.
N.D.
nitrogen source
L-Glutamine (N)
-0.4
N.D.
+0.6
N.D.
N.D.
stress
nitrate 100 mM
-0.2
N.D.
+0.4
N.D.
N.D.
nitrogen source
L-Isoleucine (N)
-0.3
N.D.
+0.7
N.D.
N.D.
pH
LB, pH8
-0.1
N.D.
+0.6
N.D.
N.D.
nitrogen source
L-Leucine (N)
-0.6
N.D.
+1.2
N.D.
N.D.
nitrogen source
Uridine (N)
-0.7
N.D.
+1.3
N.D.
N.D.
stress
Tetracycline 0.0001 mg/ml
+0.1
N.D.
+0.5
N.D.
N.D.
nitrogen source
L-tyrosine (N)
-0.2
N.D.
+0.7
N.D.
N.D.
stress
Phosphomycin 0.06 mg/ml
+0.2
N.D.
+0.4
N.D.
N.D.
motility
inner cut, R2A soft agar motility assay
-0.1
N.D.
+0.8
N.D.
N.D.
lb
LB
+0.1
N.D.
+0.6
N.D.
N.D.
stress
Paraquat dichloride 0.01 mg/ml
-0.1
N.D.
+0.8
N.D.
N.D.
stress
copper (II) chloride 1 mM
+0.1
N.D.
+0.6
N.D.
N.D.
stress
copper (II) chloride 1 mM
+0.0
N.D.
+0.7
N.D.
N.D.
phage
phage 93.1
+0.1
N.D.
+0.8
N.D.
N.D.
nitrogen source
L-Threonine (N)
-0.5
N.D.
+1.4
N.D.
N.D.
stress
syringaldehyde 2.5 mM
+0.1
N.D.
+1.0
N.D.
N.D.
nitrogen source
L-Alanine (N)
-0.0
N.D.
+1.1
N.D.
N.D.
nitrogen source
D-Alanine (N)
-0.3
N.D.
+1.5
N.D.
N.D.
nitrogen source
Ammonium chloride (N)
-0.8
N.D.
+2.1
N.D.
N.D.
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