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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1134 and Ac3H11_1135 are separated by 11 nucleotides
Ac3H11_1135 and Ac3H11_1136 are separated by 20 nucleotides
Ac3H11_1136 and Ac3H11_1137 are separated by 252 nucleotides
Ac3H11_1137 and Ac3H11_1138 are separated by 159 nucleotides
Ac3H11_1134 - Cytochrome c family protein, at 80,792 to 81,211
_1134
Ac3H11_1135 - Thiamin biosynthesis lipoprotein ApbE, at 81,223 to 82,275
_1135
Ac3H11_1136 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 82,296 to 83,219
_1136
Ac3H11_1137 - DNA-binding protein H-NS, at 83,472 to 83,774
_1137
Ac3H11_1138 - Predicted transcriptional regulators, at 83,934 to 84,809
_1138
Group
Condition
Ac3H11
_1134
Ac3H11
_1135
Ac3H11
_1136
Ac3H11
_1137
Ac3H11
_1138
stress
Chlorite 0.1 mM
-0.5
-1.1
-0.0
N.D.
-0.4
carbon source
D-Galactose (C)
-0.2
-1.1
-0.1
N.D.
-0.1
carbon source
D-Glucose (C)
-0.2
-0.7
-0.4
N.D.
-0.1
carbon source
D-Glucose (C)
-0.2
-1.0
+0.0
N.D.
-0.2
stress
2-Furfuraldehyde 0.06 vol%
-0.5
-0.4
-0.3
N.D.
+0.0
nitrogen source
L-Threonine (N)
+0.4
-0.9
+0.0
N.D.
-0.4
stress
Cobalt chloride 0.32 mM
+0.2
-1.0
-0.1
N.D.
+0.2
stress
nitrate 100 mM
+0.2
-0.9
+0.3
N.D.
-0.2
carbon source
D-Fructose (C)
+0.3
-0.7
+0.2
N.D.
-0.2
stress
perchlorate 10 mM
+0.3
-0.9
+0.2
N.D.
-0.0
nitrogen source
D-Alanine (N)
-0.2
-0.3
+0.8
N.D.
-0.2
stress
Paraquat dichloride 0.01 mg/ml
-0.6
+0.2
+0.4
N.D.
+0.1
nitrogen source
L-Leucine (N)
+0.0
+0.8
+0.2
N.D.
-0.3
stress
D-Cycloserine 0.05 mg/ml
-0.3
+0.2
+0.7
N.D.
+0.2
pH
LB, pH10
+0.5
-0.6
+0.9
N.D.
+0.2
phage
phage 93.1
+0.2
+0.5
+0.4
N.D.
-0.2
stress
syringaldehyde 2.5 mM
-0.1
+0.2
+0.5
N.D.
+0.5
nitrogen source
Ammonium chloride (N)
+0.3
+0.7
+0.2
N.D.
-0.1
stress
Nickel (II) chloride 0.6 mM
+0.3
+0.4
+0.2
N.D.
+0.3
pH
LB, pH9
+0.4
+0.2
+0.4
N.D.
+0.4
nitrogen source
L-Alanine (N)
+0.1
+0.7
+0.1
N.D.
+0.5
phage
phage 93.2
+0.4
+1.1
+0.1
N.D.
-0.0
carbon source
succinate (C)
+0.3
+0.3
+0.4
N.D.
+0.6
carbon source
succinate (C)
+0.6
+0.2
+0.6
N.D.
+0.3
nitrogen source
L-Isoleucine (N)
+0.8
+0.5
+0.3
N.D.
+0.2
nitrogen source
Uridine (N)
+0.3
+0.9
+0.5
N.D.
+0.2
pH
LB, pH10
+0.5
+0.2
+0.7
N.D.
+0.8
carbon source
D-Gluconic Acid (C)
+0.7
+0.4
+0.9
N.D.
+0.8
nitrogen source
L-tyrosine (N)
+0.6
+0.9
+1.0
N.D.
+0.8
carbon source
D-Gluconic Acid (C)
+1.0
+0.7
+1.1
N.D.
+0.7
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