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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1116 and Ac3H11_1117 are separated by 233 nucleotides
Ac3H11_1117 and Ac3H11_1118 are separated by 85 nucleotides
Ac3H11_1118 and Ac3H11_1119 are separated by 138 nucleotides
Ac3H11_1119 and Ac3H11_1120 are separated by 45 nucleotides
Ac3H11_1116 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 58,472 to 59,584
_1116
Ac3H11_1117 - Guanine deaminase (EC 3.5.4.3), at 59,818 to 61,092
_1117
Ac3H11_1118 - Deoxycytidine triphosphate deaminase (EC 3.5.4.13), at 61,178 to 61,750
_1118
Ac3H11_1119 - hypothetical protein, at 61,889 to 62,170
_1119
Ac3H11_1120 - Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF), at 62,216 to 63,916
_1120
Group
Condition
Ac3H11
_1116
Ac3H11
_1117
Ac3H11
_1118
Ac3H11
_1119
Ac3H11
_1120
stress
Zinc 1 mM
-0.5
-0.0
N.D.
-0.2
-0.1
nitrogen source
L-Proline (N)
-0.1
-0.0
N.D.
-0.5
-0.1
stress
Sisomicin 0.001 mg/ml
-0.3
+0.2
N.D.
-0.5
-0.2
nitrogen source
L-Isoleucine (N)
+0.0
-0.0
N.D.
-0.5
-0.2
nitrogen source
L-Threonine (N)
-0.3
+0.2
N.D.
-0.2
-0.3
stress
Bacitracin 0.032 mg/ml
-0.3
+0.2
N.D.
+0.2
-0.3
nitrogen source
L-Alanine (N)
-0.7
+0.2
N.D.
+0.0
+0.2
nitrogen source
L-Arginine (N)
-0.3
-0.2
N.D.
+0.2
+0.1
stress
Phosphomycin 0.02 mg/ml
-0.2
-0.0
N.D.
+0.2
-0.2
stress
Cisplatin 0.0025 mg/ml
-0.2
+0.2
N.D.
-0.3
+0.1
stress
Tetracycline 0.0001 mg/ml
-0.2
-0.2
N.D.
+0.0
+0.3
stress
Nickel (II) chloride 0.6 mM
-0.3
-0.1
N.D.
+0.2
+0.2
stress
Phosphomycin 0.06 mg/ml
-0.2
-0.0
N.D.
+0.4
-0.1
stress
Chlorite 0.1 mM
-0.2
+0.0
N.D.
+0.5
-0.2
pH
LB, pH10
-0.0
+0.1
N.D.
+0.4
-0.2
stress
Aluminum chloride 4 mM
+0.0
+0.1
N.D.
+0.4
-0.2
phage
phage 93.1
-0.1
+0.0
N.D.
-0.1
+0.5
pH
LB, pH9
+0.5
-0.0
N.D.
-0.3
+0.1
lb
LB
-0.4
-0.1
N.D.
+0.7
+0.2
lb
LB
+0.3
+0.1
N.D.
+0.1
+0.2
stress
Chloramphenicol 0.001 mg/ml
+0.1
+0.2
N.D.
+0.1
+0.3
lb
LB
+0.3
+0.1
N.D.
+0.1
+0.2
nitrogen source
Ammonium chloride (N)
-0.1
+0.1
N.D.
+0.2
+0.5
stress
copper (II) chloride 1 mM
+0.1
+0.1
N.D.
+0.4
+0.1
stress
sodium fluoride 20 mM
+0.5
+0.1
N.D.
+0.1
+0.1
stress
Cobalt chloride 0.32 mM
+0.0
+0.2
N.D.
+0.2
+0.4
pH
LB, pH10
+0.6
-0.2
N.D.
+0.2
+0.2
stress
sodium fluoride 35 mM
+0.6
+0.3
N.D.
-0.1
+0.2
stress
Cisplatin 0.005 mg/ml
+0.2
+0.2
N.D.
+0.6
-0.0
motility
inner cut, R2A soft agar motility assay
+0.6
+0.2
N.D.
-0.1
+0.4
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