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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1100 and Ac3H11_1101 are separated by 1824 nucleotides
Ac3H11_1101 and Ac3H11_1102 are separated by 153 nucleotides
Ac3H11_1102 and Ac3H11_1103 are separated by 313 nucleotides
Ac3H11_1103 and Ac3H11_1104 overlap by 4 nucleotides
Ac3H11_1100 - FIG137887: membrane protein related to purine degradation, at 35,140 to 36,402
_1100
Ac3H11_1101 - diguanylate cyclase/phosphodiesterase, at 38,227 to 40,104
_1101
Ac3H11_1102 - Outer membrane protein (porin), at 40,258 to 41,307
_1102
Ac3H11_1103 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 41,621 to 42,244
_1103
Ac3H11_1104 - hypothetical protein, at 42,241 to 42,465
_1104
Group
Condition
Ac3H11
_1100
Ac3H11
_1101
Ac3H11
_1102
Ac3H11
_1103
Ac3H11
_1104
stress
perchlorate 25 mM
-0.0
+0.1
-0.0
N.D.
-1.1
stress
Bacitracin 0.008 mg/ml
-0.0
-0.3
+0.0
N.D.
-0.3
nitrogen source
L-Histidine (N)
-0.0
+0.0
-0.4
N.D.
-0.3
stress
Sisomicin 0.001 mg/ml
-0.1
-0.2
+0.2
N.D.
-0.6
nitrogen source
L-Leucine (N)
-0.1
-0.2
+0.0
N.D.
-0.4
stress
Bacitracin 0.016 mg/ml
+0.1
-0.3
+0.0
N.D.
-0.3
motility
inner cut, R2A soft agar motility assay
-0.2
+0.4
-0.0
N.D.
-0.5
pH
LB, pH10
+0.0
+0.2
+0.1
N.D.
-0.7
nitrogen source
L-Arginine (N)
+0.2
-0.2
+0.1
N.D.
-0.3
nitrogen source
Ammonium chloride (N)
+0.0
-0.6
+0.4
N.D.
-0.0
carbon source
a-Ketoglutaric (C)
-0.2
-0.1
-0.1
N.D.
+0.2
stress
Chlorite 0.1 mM
-0.0
+0.1
+0.2
N.D.
-0.4
stress
Cobalt chloride 0.16 mM
+0.1
+0.2
-0.1
N.D.
-0.3
stress
Aluminum chloride 2 mM
-0.0
+0.3
-0.0
N.D.
-0.3
carbon source
L-Arabinose (C)
+0.0
+0.2
+0.1
N.D.
-0.3
carbon source
D-Mannose (C)
+0.1
+0.3
-0.1
N.D.
-0.3
carbon source
pyruvate (C)
-0.1
+0.3
+0.0
N.D.
-0.2
stress
sodium fluoride 35 mM
-0.1
-0.2
-0.1
N.D.
+0.4
stress
Cisplatin 0.0025 mg/ml
+0.1
+0.3
-0.3
N.D.
+0.0
stress
copper (II) chloride 2 mM
-0.1
+0.2
+0.3
N.D.
-0.2
stress
2-Furfuraldehyde 0.06 vol%
-0.2
+0.1
+0.0
N.D.
+0.3
carbon source
D-Gluconic Acid (C)
-0.2
-0.0
-0.1
N.D.
+0.5
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.1
-0.3
N.D.
+0.6
nitrogen source
D-Alanine (N)
+0.0
-0.2
+0.2
N.D.
+0.3
lb
LB
-0.2
+0.1
-0.1
N.D.
+0.6
pH
LB, pH10
-0.1
+0.4
-0.1
N.D.
+0.2
carbon source
D-Ribose (C)
-0.1
+0.3
-0.0
N.D.
+0.3
lb
LB
+0.1
+0.4
-0.1
N.D.
+0.2
stress
Zinc 1 mM
-0.0
+0.4
+0.1
N.D.
+0.2
stress
Cisplatin 0.005 mg/ml
+0.1
+0.0
-0.1
N.D.
+0.6
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