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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1078 and Ac3H11_1079 are separated by 80 nucleotides
Ac3H11_1079 and Ac3H11_1080 are separated by 27 nucleotides
Ac3H11_1080 and Ac3H11_1081 overlap by 4 nucleotides
Ac3H11_1081 and Ac3H11_1082 are separated by 200 nucleotides
Ac3H11_1078 - hypothetical protein, at 9,560 to 10,378
_1078
Ac3H11_1079 - NADP-dependent malic enzyme (EC 1.1.1.40), at 10,459 to 12,765
_1079
Ac3H11_1080 - hypothetical protein, at 12,793 to 12,948
_1080
Ac3H11_1081 - Xanthine-uracil permease, at 12,945 to 14,432
_1081
Ac3H11_1082 - predicted biotin regulatory protein BioR (GntR family), at 14,633 to 15,319
_1082
Group
Condition
Ac3H11
_1078
Ac3H11
_1079
Ac3H11
_1080
Ac3H11
_1081
Ac3H11
_1082
nitrogen source
D-Alanine (N)
N.D.
-0.3
-5.5
-0.5
+0.3
carbon source
L-Glutamine (C)
N.D.
-1.4
-0.2
-0.3
-0.1
nitrogen source
L-Isoleucine (N)
N.D.
-0.1
-2.8
+0.5
+0.5
stress
Cisplatin 0.0025 mg/ml
N.D.
+0.6
-2.2
+0.4
-0.5
stress
Cobalt chloride 0.32 mM
N.D.
+0.3
-1.3
-0.3
-0.3
stress
Cisplatin 0.005 mg/ml
N.D.
+0.7
-0.1
-0.4
-1.6
stress
Cobalt chloride 0.4 mM
N.D.
+0.2
-0.7
-0.4
-0.5
carbon source
a-Ketoglutaric (C)
N.D.
-0.2
+0.1
-1.5
+0.2
stress
D-Cycloserine 0.05 mg/ml
N.D.
+0.1
-1.4
+0.5
-0.5
stress
Cobalt chloride 0.16 mM
N.D.
+0.4
-0.2
-1.2
+0.1
nitrogen source
Ammonium chloride (N)
N.D.
+0.4
-1.7
-0.8
+1.2
nitrogen source
L-Proline (N)
N.D.
-1.5
+0.8
-0.3
+0.4
stress
Paraquat dichloride 0.01 mg/ml
N.D.
+0.7
+0.3
-0.1
-1.0
stress
Fusidic 0.001 mg/ml
N.D.
+0.7
+0.5
-0.7
-0.3
stress
Phosphomycin 0.06 mg/ml
N.D.
+0.5
+1.2
-0.1
-1.4
stress
Chlorite 0.1 mM
N.D.
+0.6
+0.4
+0.1
-0.9
nitrogen source
L-Alanine (N)
N.D.
-0.4
+0.5
+0.6
-0.4
stress
nitrite 10 mM
N.D.
+0.5
+0.9
-0.4
-0.5
carbon source
a-Ketoglutaric (C)
N.D.
-0.3
+0.6
-0.6
+0.8
stress
copper (II) chloride 1 mM
N.D.
+0.5
+0.9
-0.5
-0.1
stress
perchlorate 10 mM
N.D.
+0.9
+0.4
-0.2
-0.3
stress
Bacitracin 0.008 mg/ml
N.D.
+0.5
+0.9
-0.6
+0.1
pH
LB, pH10
N.D.
+1.0
+1.0
-1.0
+0.1
lb
LB
N.D.
+0.6
+0.9
-0.6
+0.5
stress
copper (II) chloride 2 mM
N.D.
+0.2
+1.6
-0.6
+0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
+0.6
+0.1
-0.2
+1.1
stress
A22 0.025 mg/ml
N.D.
+0.7
+1.4
-0.3
-0.0
carbon source
succinate (C)
N.D.
+0.4
+0.9
+0.3
+0.3
stress
Sisomicin 0.001 mg/ml
N.D.
+0.7
+1.6
-0.3
+0.1
pH
LB, pH10
N.D.
+1.0
+0.8
+0.5
+0.4
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