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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1076 and Ac3H11_1077 are separated by 219 nucleotides
Ac3H11_1077 and Ac3H11_1078 are separated by 388 nucleotides
Ac3H11_1078 and Ac3H11_1079 are separated by 80 nucleotides
Ac3H11_1079 and Ac3H11_1080 are separated by 27 nucleotides
Ac3H11_1076 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 7,093 to 7,917
_1076
Ac3H11_1077 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 8,137 to 9,171
_1077
Ac3H11_1078 - hypothetical protein, at 9,560 to 10,378
_1078
Ac3H11_1079 - NADP-dependent malic enzyme (EC 1.1.1.40), at 10,459 to 12,765
_1079
Ac3H11_1080 - hypothetical protein, at 12,793 to 12,948
_1080
Group
Condition
Ac3H11
_1076
Ac3H11
_1077
Ac3H11
_1078
Ac3H11
_1079
Ac3H11
_1080
nitrogen source
D-Alanine (N)
+0.4
-0.1
N.D.
-0.3
-5.5
nitrogen source
L-Isoleucine (N)
+0.3
-0.1
N.D.
-0.1
-2.8
stress
Cisplatin 0.0025 mg/ml
-0.0
-0.4
N.D.
+0.6
-2.2
carbon source
L-Glutamine (C)
-0.0
+0.0
N.D.
-1.4
-0.2
stress
D-Cycloserine 0.05 mg/ml
+0.4
-0.4
N.D.
+0.1
-1.4
stress
Nickel (II) chloride 0.8 mM
+0.1
+0.1
N.D.
-0.2
-1.2
nitrogen source
L-Glutamine (N)
+0.4
-0.1
N.D.
-1.2
-0.3
stress
Cobalt chloride 0.32 mM
+0.1
-0.1
N.D.
+0.3
-1.3
nitrogen source
Ammonium chloride (N)
+0.1
+0.0
N.D.
+0.4
-1.7
carbon source
Glycerol (C)
+0.3
-0.1
N.D.
-0.1
-1.0
nitrogen source
L-Proline (N)
+0.0
-0.0
N.D.
-1.5
+0.8
stress
Cobalt chloride 0.4 mM
-0.3
+0.3
N.D.
+0.2
-0.7
stress
Doxycycline hyclate 0.000025 mg/ml
+0.2
-0.3
N.D.
+0.6
-0.7
lb
LB
-0.2
-0.4
N.D.
+0.6
+0.6
lb
LB
-0.3
-0.3
N.D.
+0.6
+0.7
carbon source
L-Malic (C)
+0.2
-0.3
N.D.
-0.0
+1.0
stress
nitrite 10 mM
-0.2
-0.1
N.D.
+0.2
+1.1
stress
Bacitracin 0.008 mg/ml
-0.2
-0.2
N.D.
+0.5
+0.9
stress
Chlorite 0.1 mM
+0.4
-0.3
N.D.
+0.6
+0.4
pH
LB, pH10
-0.4
-0.3
N.D.
+1.0
+1.0
stress
nitrite 10 mM
+0.0
-0.2
N.D.
+0.5
+0.9
stress
copper (II) chloride 1 mM
-0.1
-0.1
N.D.
+0.5
+0.9
stress
perchlorate 25 mM
-0.1
-0.1
N.D.
+0.7
+0.7
lb
LB
-0.1
+0.0
N.D.
+0.6
+0.9
stress
Phosphomycin 0.06 mg/ml
+0.3
-0.5
N.D.
+0.5
+1.2
pH
LB, pH10
-0.2
+0.0
N.D.
+1.0
+0.8
stress
perchlorate 10 mM
+0.2
-0.0
N.D.
+0.9
+0.4
stress
A22 0.025 mg/ml
-0.2
-0.1
N.D.
+0.7
+1.4
stress
copper (II) chloride 2 mM
+0.1
-0.0
N.D.
+0.2
+1.6
stress
Sisomicin 0.001 mg/ml
+0.1
+0.1
N.D.
+0.7
+1.6
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