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Cofit
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_932 and Ac3H11_933 are separated by 9 nucleotides
Ac3H11_933 and Ac3H11_1044 are separated by 94 nucleotides
Ac3H11_1044 and Ac3H11_934 are separated by 78 nucleotides
Ac3H11_934 and Ac3H11_935 are separated by 122 nucleotides
Ac3H11_932 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 46,745 to 47,980
_932
Ac3H11_933 - Probable transmembrane drug efflux protein, at 47,990 to 51,172
_933
Ac3H11_1044 - tRNA-Leu-TAG, at 51,267 to 51,350
_1044
Ac3H11_934 - Cell division trigger factor (EC 5.2.1.8), at 51,429 to 52,742
_934
Ac3H11_935 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 52,865 to 53,473
_935
Group
Condition
Ac3H11
_932
Ac3H11
_933
Ac3H11
_1044
Ac3H11
_934
Ac3H11
_935
stress
Chloramphenicol 0.001 mg/ml
+0.1
+0.0
-2.8
-3.8
N.D.
stress
Tetracycline 0.0001 mg/ml
-0.1
+0.2
-2.1
-3.3
N.D.
motility
inner cut, R2A soft agar motility assay
-0.1
+0.1
-4.2
-0.5
N.D.
stress
Chloramphenicol 0.0005 mg/ml
-0.1
+0.0
-2.5
-1.9
N.D.
motility
inner cut, R2A soft agar motility assay
+0.4
+0.3
-4.0
-1.1
N.D.
motility
inner cut, R2A soft agar motility assay
-0.3
+0.6
-4.3
-0.4
N.D.
nitrogen source
L-Proline (N)
-0.3
-0.1
-2.7
-1.1
N.D.
stress
Tetracycline 0.00005 mg/ml
-0.1
+0.2
-1.4
-1.9
N.D.
carbon source
D-Fructose (C)
-0.2
+0.1
-3.0
-0.1
N.D.
carbon source
D-Glucose (C)
-0.2
+0.1
-1.7
-1.2
N.D.
phage
phage 93.1
-0.1
-0.1
-3.1
+0.3
N.D.
nitrogen source
L-Alanine (N)
-1.0
-0.4
-0.2
-1.1
N.D.
carbon source
D-Fructose (C)
+0.3
+0.0
-2.4
-0.6
N.D.
stress
Fusidic 0.001 mg/ml
+0.3
+0.2
-1.5
-1.4
N.D.
nitrogen source
Ammonium chloride (N)
-1.2
-1.1
-0.4
+0.2
N.D.
carbon source
D-Fructose (C)
-0.0
+0.1
-2.2
-0.2
N.D.
carbon source
L-Glutamine (C)
+0.1
-0.0
-1.2
-1.1
N.D.
stress
Sisomicin 0.004 mg/ml
+0.2
+0.1
-1.4
-1.0
N.D.
carbon source
D,L-Lactate (C)
+0.3
+0.0
-2.2
-0.1
N.D.
carbon source
Tween 20 (C)
+0.3
+0.0
-1.3
-0.8
N.D.
phage
phage 93.1
-0.1
-0.1
-1.5
+0.9
N.D.
nitrogen source
Uridine (N)
+0.0
+0.1
-1.5
+1.1
N.D.
stress
D-Cycloserine 0.05 mg/ml
-0.1
-0.3
-0.9
+1.2
N.D.
carbon source
L-Malic (C)
+0.1
-0.0
-1.4
+1.5
N.D.
stress
Chlorite 0.1 mM
+0.6
+0.1
-1.3
+0.8
N.D.
stress
copper (II) chloride 2 mM
+0.4
+0.1
+0.4
+1.7
N.D.
pH
LB, pH10
+0.1
-0.0
+1.7
+1.1
N.D.
pH
LB, pH10
+0.3
-0.1
+1.8
+1.3
N.D.
stress
sodium fluoride 20 mM
-0.1
+0.1
+1.6
+1.9
N.D.
stress
sodium fluoride 35 mM
-0.1
+0.1
+1.8
+2.0
N.D.
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