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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_101 and Ac3H11_102 are separated by 34 nucleotides
Ac3H11_102 and Ac3H11_103 are separated by 1 nucleotides
Ac3H11_103 and Ac3H11_104 overlap by 1 nucleotides
Ac3H11_104 and Ac3H11_105 overlap by 1 nucleotides
Ac3H11_101 - Benzoate transport, extracellular ligand-binding receptor, at 104,825 to 105,994
_101
Ac3H11_102 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 106,029 to 106,910
_102
Ac3H11_103 - Benzoate transport, inner-membrane translocator precursor, at 106,912 to 107,961
_103
Ac3H11_104 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 107,961 to 108,710
_104
Ac3H11_105 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 108,710 to 109,414
_105
Group
Condition
Ac3H11
_101
Ac3H11
_102
Ac3H11
_103
Ac3H11
_104
Ac3H11
_105
stress
Paraquat dichloride 0.01 mg/ml
-0.4
-0.0
-0.2
-0.6
-0.5
pH
LB, pH10
+0.2
-0.1
-0.4
-1.3
+0.0
nitrogen source
D-Alanine (N)
+0.0
-0.2
-0.3
-0.9
-0.1
stress
copper (II) chloride 1 mM
-0.1
-0.4
-0.3
-0.4
-0.3
stress
nitrite 10 mM
+0.2
-0.8
-0.3
+0.5
-0.5
stress
Cisplatin 0.005 mg/ml
-0.0
-0.2
-0.1
+0.3
-0.8
stress
nitrate 100 mM
+0.2
-0.0
-0.3
-0.6
+0.0
stress
Cobalt chloride 0.32 mM
-0.3
-0.0
+0.2
-0.5
+0.0
motility
inner cut, R2A soft agar motility assay
-0.7
-0.4
+0.1
+0.5
-0.1
nitrogen source
L-Isoleucine (N)
-0.3
-0.2
-0.1
+0.4
-0.1
lb
LB
+0.4
+0.1
-0.4
-0.3
-0.0
lb
LB
+0.3
+0.1
-0.1
-0.4
+0.2
stress
A22 0.025 mg/ml
+0.3
+0.2
-0.3
+0.3
-0.1
stress
Cisplatin 0.0025 mg/ml
-0.3
-0.2
-0.1
+0.8
+0.2
stress
sodium fluoride 50 mM
+0.2
+0.1
-0.4
+0.3
+0.2
nitrogen source
L-Alanine (N)
+0.1
-0.2
-0.3
+0.7
+0.2
motility
inner cut, R2A soft agar motility assay
-0.0
+0.1
+0.1
+0.5
-0.3
lb
LB
+0.2
+0.1
+0.2
-0.2
+0.2
motility
inner cut, R2A soft agar motility assay
+0.1
+0.1
+0.6
+0.3
-0.5
carbon source
a-Ketoglutaric (C)
-0.2
-0.4
+0.0
+1.3
-0.1
carbon source
D,L-Lactate (C)
+0.0
+0.2
+0.2
+0.5
+0.1
carbon source
pyruvate (C)
+0.3
+0.2
+0.2
+0.4
+0.0
pH
LB, pH10
+0.8
-0.0
-0.2
+0.3
+0.3
carbon source
L-Lactate (C)
+0.5
+0.3
+0.0
+0.1
+0.2
carbon source
D,L-Lactate (C)
+0.1
+0.1
+0.5
+0.3
+0.3
nitrogen source
Ammonium chloride (N)
-0.3
+1.0
-0.3
+0.6
+0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
+0.1
+0.3
+0.4
+0.4
carbon source
D-Gluconic Acid (C)
-0.1
+0.2
-0.0
+1.1
+0.3
carbon source
succinate (C)
+0.5
+0.2
+0.2
+0.6
+0.1
carbon source
D-Lactate (C)
+0.3
+0.4
+0.4
+0.3
+0.4
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