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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1026 and Ac3H11_1027 are separated by 269 nucleotides
Ac3H11_1027 and Ac3H11_1028 overlap by 4 nucleotides
Ac3H11_1028 and Ac3H11_1029 are separated by 10 nucleotides
Ac3H11_1029 and Ac3H11_1030 are separated by 86 nucleotides
Ac3H11_1026 - ATP-dependent RNA helicase RhlE, at 148,010 to 149,302
_1026
Ac3H11_1027 - FIG01198047: hypothetical protein, at 149,572 to 149,982
_1027
Ac3H11_1028 - Translation initiation factor SUI1-related protein, at 149,979 to 150,341
_1028
Ac3H11_1029 - Putative cytoplasmic protein, at 150,352 to 150,579
_1029
Ac3H11_1030 - hypothetical protein, at 150,666 to 150,872
_1030
Group
Condition
Ac3H11
_1026
Ac3H11
_1027
Ac3H11
_1028
Ac3H11
_1029
Ac3H11
_1030
pH
LB, pH10
+0.0
-2.8
N.D.
-1.6
-0.8
stress
Cisplatin 0.005 mg/ml
+0.1
-4.0
N.D.
-1.3
+0.1
nitrogen source
Ammonium chloride (N)
+0.5
-2.6
N.D.
-2.7
-0.1
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.0
-2.1
N.D.
-2.9
+0.1
lb
LB
-0.2
-1.5
N.D.
-2.5
+0.0
stress
Cisplatin 0.0025 mg/ml
-0.1
-0.9
N.D.
-2.5
-0.4
lb
LB
+0.2
-4.1
N.D.
+0.1
+0.1
motility
inner cut, R2A soft agar motility assay
+0.2
-1.1
N.D.
-1.6
-0.5
motility
inner cut, R2A soft agar motility assay
+0.1
-1.8
N.D.
-1.0
-0.3
stress
Cobalt chloride 0.4 mM
+0.1
-2.1
N.D.
-0.7
-0.1
stress
Tetracycline 0.0001 mg/ml
-0.2
-0.5
N.D.
-2.1
-0.0
stress
sodium fluoride 20 mM
+0.0
-1.4
N.D.
-1.3
-0.1
carbon source
a-Ketoglutaric (C)
+0.0
-0.3
N.D.
-2.8
+0.4
stress
copper (II) chloride 2 mM
+0.2
-0.9
N.D.
-1.0
-0.4
lb
LB
-0.2
-1.3
N.D.
-0.7
+0.2
phage
phage 93.2
+0.3
-0.3
N.D.
-1.9
-0.1
stress
Cobalt chloride 0.32 mM
+0.1
+0.2
N.D.
-1.9
-0.0
stress
nitrate 100 mM
+0.2
-1.1
N.D.
-0.8
+0.2
stress
Bacitracin 0.008 mg/ml
+0.0
+0.5
N.D.
-1.7
+0.2
temperature
LB 23C
+0.1
-1.2
N.D.
+0.7
-0.5
stress
Cobalt chloride 0.32 mM
+0.1
-1.9
N.D.
+0.9
+0.1
carbon source
D-Fructose (C)
+0.2
+0.9
N.D.
-1.5
-0.1
carbon source
L-Arabinose (C)
+0.2
+1.3
N.D.
-1.4
+0.2
carbon source
D-Ribose (C)
+0.2
-0.6
N.D.
+1.6
+0.0
carbon source
D-Fructose (C)
+0.4
+2.3
N.D.
-0.4
-0.2
pH
LB, pH10
-0.4
+2.4
N.D.
-0.5
+0.6
stress
Sisomicin 0.004 mg/ml
+0.0
+2.8
N.D.
-0.5
-0.2
stress
D-Cycloserine 0.05 mg/ml
+0.0
-1.0
N.D.
+3.3
-0.1
carbon source
D-Lactate (C)
+0.3
+1.3
N.D.
+0.7
+0.2
nitrogen source
D-Alanine (N)
+0.6
+1.8
N.D.
+0.2
+0.2
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