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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1017 and Ac3H11_1018 are separated by 46 nucleotides
Ac3H11_1018 and Ac3H11_1019 are separated by 118 nucleotides
Ac3H11_1019 and Ac3H11_1020 are separated by 153 nucleotides
Ac3H11_1020 and Ac3H11_1021 are separated by 11 nucleotides
Ac3H11_1017 - Transcriptional regulator, TetR family, at 139,153 to 139,785
_1017
Ac3H11_1018 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 139,832 to 141,937
_1018
Ac3H11_1019 - 3'-5' exonuclease, at 142,056 to 142,703
_1019
Ac3H11_1020 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 142,857 to 143,927
_1020
Ac3H11_1021 - hypothetical protein, at 143,939 to 144,220
_1021
Group
Condition
Ac3H11
_1017
Ac3H11
_1018
Ac3H11
_1019
Ac3H11
_1020
Ac3H11
_1021
phage
phage 93.2
-0.4
+0.0
-0.6
-0.1
N.D.
stress
copper (II) chloride 2 mM
-0.2
-0.4
-0.5
+0.3
N.D.
stress
Cobalt chloride 0.32 mM
+0.0
-0.1
-0.5
-0.1
N.D.
carbon source
D-Mannose (C)
-0.0
+0.0
-0.7
+0.0
N.D.
nitrogen source
L-Threonine (N)
-0.6
+0.1
+0.1
-0.2
N.D.
motility
inner cut, R2A soft agar motility assay
+0.1
+0.1
-0.8
+0.0
N.D.
nitrogen source
Uridine (N)
-0.3
+0.1
-0.2
-0.2
N.D.
stress
perchlorate 25 mM
+0.1
-0.1
-0.5
+0.0
N.D.
phage
phage 93.1
-0.3
+0.2
-0.5
+0.1
N.D.
stress
Cisplatin 0.0025 mg/ml
+0.4
+0.0
-0.6
-0.2
N.D.
stress
Phosphomycin 0.06 mg/ml
+0.2
-0.1
-0.8
+0.3
N.D.
nitrogen source
D-Alanine (N)
-0.3
+0.0
+0.3
-0.2
N.D.
stress
Chlorite 0.1 mM
+0.1
+0.2
-0.4
-0.1
N.D.
nitrogen source
Ammonium chloride (N)
-0.6
+0.4
+0.1
-0.0
N.D.
pH
LB, pH10
+0.3
-0.1
-0.5
+0.2
N.D.
lb
LB
+0.1
+0.2
-0.3
+0.2
N.D.
nitrogen source
L-Isoleucine (N)
-0.3
-0.0
+0.5
-0.1
N.D.
carbon source
D-Fructose (C)
-0.2
+0.1
+0.3
+0.1
N.D.
lb
LB
-0.1
+0.1
+0.4
-0.1
N.D.
pH
LB, pH10
-0.4
-0.0
+0.4
+0.3
N.D.
carbon source
D-Gluconic Acid (C)
+0.8
+0.4
-0.7
-0.0
N.D.
motility
inner cut, R2A soft agar motility assay
-0.1
+0.2
+0.4
+0.1
N.D.
stress
A22 0.025 mg/ml
-0.0
+0.1
+0.4
+0.2
N.D.
carbon source
D-Gluconic Acid (C)
+0.7
+0.1
-0.1
+0.1
N.D.
stress
Nickel (II) chloride 0.8 mM
+0.1
+0.0
+0.5
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
+0.4
+0.3
+0.2
-0.0
N.D.
nitrogen source
L-Alanine (N)
-0.0
-0.2
+0.8
+0.3
N.D.
lb
LB
-0.0
+0.4
+0.5
+0.0
N.D.
carbon source
a-Ketoglutaric (C)
+0.0
+0.3
+0.6
+0.0
N.D.
stress
Cisplatin 0.005 mg/ml
-0.3
+0.5
+0.9
-0.1
N.D.
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