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Cofit
Protein
Homologs
Fitness for 5 genes in
Acidovorax sp. GW101-3H11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ac3H11_1001 and Ac3H11_1002 are separated by 295 nucleotides
Ac3H11_1002 and Ac3H11_1003 are separated by 136 nucleotides
Ac3H11_1003 and Ac3H11_1004 are separated by 305 nucleotides
Ac3H11_1004 and Ac3H11_1005 are separated by 1 nucleotides
Ac3H11_1001 - GGDEF/PAS/PAC-domain containing protein, at 124,548 to 125,720
_1001
Ac3H11_1002 - ABC transporter ATP-binding protein, at 126,016 to 127,086
_1002
Ac3H11_1003 - ABC transporter substrate-binding protein, at 127,223 to 128,461
_1003
Ac3H11_1004 - ABC transporter permease protein, at 128,767 to 129,681
_1004
Ac3H11_1005 - Putrescine transport system permease protein potI, at 129,683 to 130,570
_1005
Group
Condition
Ac3H11
_1001
Ac3H11
_1002
Ac3H11
_1003
Ac3H11
_1004
Ac3H11
_1005
stress
Cisplatin 0.005 mg/ml
-0.2
-0.6
-0.1
+0.2
-1.1
nitrogen source
L-Alanine (N)
+0.2
-0.9
+0.0
-1.1
+0.6
pH
LB, pH10
-0.3
+0.0
-0.3
+0.1
-0.5
carbon source
a-Ketoglutaric (C)
-0.2
+0.3
-0.1
-0.6
-0.2
stress
Doxycycline hyclate 0.000025 mg/ml
+0.1
-0.5
-0.2
-0.3
+0.1
stress
Cisplatin 0.0025 mg/ml
-0.0
-0.3
-0.0
+0.3
-0.5
phage
phage 93.1
+0.3
-0.5
-0.2
-0.1
+0.1
motility
inner cut, R2A soft agar motility assay
+0.3
-0.1
-0.6
-0.4
+0.4
stress
perchlorate 25 mM
+0.0
+0.2
-0.2
+0.1
-0.5
lb
LB
+0.2
-0.3
+0.0
-0.2
-0.1
stress
perchlorate 10 mM
+0.2
-0.1
+0.0
+0.2
-0.4
carbon source
pyruvate (C)
+0.1
+0.3
+0.0
-0.2
-0.3
stress
Chlorite 0.1 mM
+0.0
-0.2
+0.1
-0.4
+0.4
stress
copper (II) chloride 1 mM
+0.2
+0.1
+0.2
+0.0
-0.6
stress
Nickel (II) chloride 0.6 mM
-0.0
-0.4
+0.1
-0.0
+0.3
stress
nitrate 20 mM
-0.1
+0.2
-0.2
-0.2
+0.3
phage
phage 93.2
-0.1
+0.3
+0.3
-0.0
-0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.2
-0.1
-0.1
-0.2
+0.4
stress
D-Cycloserine 0.05 mg/ml
-0.2
+0.9
-0.1
-0.0
-0.4
stress
2-Furfuraldehyde 0.06 vol%
+0.1
+0.0
+0.3
+0.2
-0.3
stress
A22 0.025 mg/ml
+0.3
-0.1
+0.3
-0.2
-0.1
lb
LB
+0.1
-0.5
-0.1
+0.5
+0.4
nitrogen source
L-Histidine (N)
+0.0
+0.5
-0.1
-0.2
+0.1
stress
copper (II) chloride 2 mM
-0.0
+0.5
-0.2
+0.3
-0.2
carbon source
L-Lactate (C)
+0.3
+0.3
+0.2
+0.2
-0.5
motility
inner cut, R2A soft agar motility assay
+0.4
+0.3
+0.0
+0.2
-0.4
stress
Phosphomycin 0.06 mg/ml
+0.0
-0.3
-0.1
+0.4
+0.6
nitrogen source
L-tyrosine (N)
+0.0
+0.3
+0.3
-0.1
+0.3
nitrogen source
L-Threonine (N)
-0.1
+0.2
+0.2
+0.4
+0.2
motility
inner cut, R2A soft agar motility assay
+0.0
+0.3
-0.1
+0.5
+0.3
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