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Protein
Homologs
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS32430 and AZOBR_RS32435 are separated by 7 nucleotides
AZOBR_RS32435 and AZOBR_RS32440 are separated by 202 nucleotides
AZOBR_RS32440 and AZOBR_RS32445 are separated by 541 nucleotides
AZOBR_RS32445 and AZOBR_RS32450 are separated by 243 nucleotides
AZOBR_RS32430: AZOBR_RS32430 - cysteine synthase, at 641,001 to 642,152
_RS32430
AZOBR_RS32435: AZOBR_RS32435 - dfrA, at 642,160 to 642,537
_RS32435
AZOBR_RS32440: AZOBR_RS32440 - ArsR family transcriptional regulator, at 642,740 to 643,213
_RS32440
AZOBR_RS32445: AZOBR_RS32445 - IclR family transcriptional regulator, at 643,755 to 644,582
_RS32445
AZOBR_RS32450: AZOBR_RS32450 - hypothetical protein, at 644,826 to 645,578
_RS32450
Group
Condition
AZOBR
_RS32430
AZOBR
_RS32435
AZOBR
_RS32440
AZOBR
_RS32445
AZOBR
_RS32450
carbon source
a-Ketoglutaric (C)
-0.2
-0.4
-0.2
-0.3
-0.5
lb
LB
-0.3
-0.1
-0.6
-0.4
-0.1
nitrogen source
L-Isoleucine (N)
-0.4
-0.4
-0.6
+0.0
+0.0
carbon source
D-Gluconic Acid (C)
+0.0
-0.4
-0.1
-0.3
-0.4
stress
Benzethonium chloride 0.003 mM
-0.4
-0.3
-0.4
-0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
+0.1
-0.5
-0.4
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.0
-0.4
-0.4
-0.3
+0.2
carbon source
D-Fructose (C)
+0.2
-0.4
-0.2
-0.3
-0.1
stress
1-octen-3-ol 0.6030326667 mM
-0.2
+0.2
-0.5
-0.1
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.8
+0.5
-0.4
+0.2
-0.0
nitrogen source
L-Serine (N)
+0.2
-0.1
-0.5
+0.2
-0.3
nitrogen source
L-Threonine (N)
+0.3
-0.5
-0.5
+0.3
-0.0
lb
LB
+0.1
-0.2
+0.3
-0.5
-0.1
motility
inner cut, LB soft agar motility assay
-1.0
+0.5
+0.4
+0.0
-0.2
carbon source
L-Proline (C)
+0.2
-0.3
+0.2
-0.3
-0.2
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.6
+0.1
-0.4
+0.2
+0.2
nitrogen source
L-Phenylalanine (N)
+0.4
-0.3
-0.3
+0.0
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.4
-0.2
-0.4
+0.5
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.2
+0.2
-0.3
-0.2
+0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.2
+0.3
-0.4
+0.1
+0.2
stress
2-Furfuraldehyde 0.2 vol%
+0.2
+0.2
+0.4
-0.1
-0.3
stress
Sisomicin 0.01 mg/ml
+0.3
-0.4
+0.2
+0.3
-0.1
nitrogen source
L-Glutamic (N)
+0.3
+0.6
-0.4
+0.0
-0.0
stress
2-pentyl-furan 1.335528 mM
+0.2
+0.1
+0.4
+0.2
-0.2
motility
inner cut, LB soft agar motility assay
-0.0
+1.0
+0.2
-0.0
-0.4
stress
D-Cycloserine 0.125 mg/ml
+0.2
+0.1
+0.4
-0.1
+0.2
nitrogen source
nitrate (N)
+0.4
+0.3
+0.3
-0.3
+0.2
stress
3-octanone 6.3476 mM
+0.5
-0.3
+0.7
-0.1
+0.1
stress
2-pentyl-furan 1.335528 mM
+0.4
-0.1
+0.5
-0.0
+0.3
stress
2-pentyl-furan 2.671 mM
+0.1
+0.5
-0.2
+0.5
+0.4
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