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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS32320 and AZOBR_RS32325 are separated by 257 nucleotides
AZOBR_RS32325 and AZOBR_RS32335 are separated by 995 nucleotides
AZOBR_RS32335 and AZOBR_RS29645 are separated by 90 nucleotides
AZOBR_RS29645 and AZOBR_RS32340 are separated by 150 nucleotides
AZOBR_RS32320: AZOBR_RS32320 - LacI family transcriptional regulator, at 617,826 to 618,818
_RS32320
AZOBR_RS32325: AZOBR_RS32325 - Fructose PTS system (E-I, HPr, and E-IIA components)
(from data)
, at 619,076 to 621,616
_RS32325
AZOBR_RS32335: AZOBR_RS32335 - fructose-specific PTS system (fructose 1-phosphate forming), EII-B'BC components (FruA)
(from data)
, at 622,612 to 624,354
_RS32335
AZOBR_RS29645: AZOBR_RS29645 - suhB, at 624,445 to 624,522
_RS29645
AZOBR_RS32340: AZOBR_RS32340 - hypothetical protein, at 624,673 to 625,173
_RS32340
Group
Condition
AZOBR
_RS32320
AZOBR
_RS32325
AZOBR
_RS32335
AZOBR
_RS29645
AZOBR
_RS32340
nitrogen source
L-Isoleucine (N)
-2.0
-0.4
-0.2
-2.5
-1.2
carbon source
D-Fructose (C)
-0.7
-2.5
-2.2
-0.5
+0.3
stress
2-pentyl-furan 1.780666667 mM
+0.2
-0.3
-0.1
-2.9
-2.4
carbon source
D-Fructose (C)
-0.6
-2.4
-2.3
-0.0
+0.2
stress
2-pentyl-furan 1.780666667 mM
+0.4
-0.2
+0.0
-3.0
-2.1
stress
1-octen-3-ol 0.7753276667 mM
-0.4
+0.2
-0.1
-2.8
-1.3
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-4.4
-0.9
-0.4
+0.3
+1.0
stress
2-pentyl-furan 1.335528 mM
+0.6
-0.6
+0.2
-2.9
-1.5
stress
2-pentyl-furan 1.335528 mM
-0.1
+0.1
+0.1
-2.9
-1.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-1.7
-0.8
-0.4
-0.9
-0.2
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-3.1
-1.0
-0.2
+0.8
-0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-2.0
-0.5
-0.7
+0.1
-0.6
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-1.9
-0.4
-0.8
-0.5
+0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.6
+0.2
-0.2
-1.2
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-2.7
-0.3
+0.1
-0.2
-0.3
lb no stress control
LB no stress control
+0.2
-0.3
-0.1
-2.8
-0.3
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
-0.4
+0.2
-0.1
-2.9
+0.1
stress
2-pentyl-furan 1.780666667 mM
+0.3
-0.2
-0.1
-2.9
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.6
+0.5
+0.3
-0.8
-0.9
stress
3-octanone 6.3476 mM
+0.6
-0.2
-0.1
-2.7
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-2.3
+0.5
+0.2
-1.0
+0.6
stress
2-pentyl-furan 2.671 mM
-0.3
-0.2
+0.0
-2.8
+1.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-2.5
+0.6
+0.1
+0.3
+0.2
stress
Benzethonium chloride 0.003 mM
+0.9
-0.6
-1.0
-0.9
+0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-2.2
+0.5
+0.5
+0.1
+0.5
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-1.8
+0.3
+0.5
+0.6
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.7
+0.4
-0.2
+1.3
+0.5
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-1.7
+0.4
+1.1
-0.2
+0.7
motility
inner cut, LB soft agar motility assay
+1.4
-1.0
-0.0
+0.9
-0.2
motility
inner cut, LB soft agar motility assay
+2.5
+0.1
-0.2
+1.5
+0.1
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