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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS32265 and AZOBR_RS32270 are separated by 265 nucleotides
AZOBR_RS32270 and AZOBR_RS32275 are separated by 98 nucleotides
AZOBR_RS32275 and AZOBR_RS32280 are separated by 1 nucleotides
AZOBR_RS32280 and AZOBR_RS32285 are separated by 44 nucleotides
AZOBR_RS32265: AZOBR_RS32265 - hypothetical protein, at 606,822 to 607,211
_RS32265
AZOBR_RS32270: AZOBR_RS32270 - branched-chain amino acid ABC transporter substrate-binding protein, at 607,477 to 608,613
_RS32270
AZOBR_RS32275: AZOBR_RS32275 - branched-chain amino acid ABC transporter permease, at 608,712 to 609,584
_RS32275
AZOBR_RS32280: AZOBR_RS32280 - branched-chain amino acid ABC transporter permease, at 609,586 to 610,557
_RS32280
AZOBR_RS32285: AZOBR_RS32285 - hypothetical protein, at 610,602 to 612,128
_RS32285
Group
Condition
AZOBR
_RS32265
AZOBR
_RS32270
AZOBR
_RS32275
AZOBR
_RS32280
AZOBR
_RS32285
stress
2-pentyl-furan 2.671 mM
N.D.
-0.1
-1.0
-0.0
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.1
-0.2
-0.0
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.2
-0.7
-0.1
-0.4
nitrogen source
L-Phenylalanine (N)
N.D.
-0.2
-0.5
-0.2
-0.0
stress
2-pentyl-furan 1.780666667 mM
N.D.
-0.5
+0.1
-0.5
-0.0
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
-0.0
+0.1
-0.3
-0.7
lb
LB
N.D.
-0.1
-0.8
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
-0.1
-0.8
+0.3
-0.2
lb no stress control
LB no stress control
N.D.
+0.0
-0.4
-0.1
-0.3
lb
LB
N.D.
+0.1
-0.4
-0.1
-0.2
carbon source
D-Gluconic Acid (C)
N.D.
-0.4
+0.2
-0.1
-0.3
stress
2-pentyl-furan 1.335528 mM
N.D.
-0.2
-0.3
-0.3
+0.3
nitrogen source
L-Threonine (N)
N.D.
-0.3
+0.6
-0.0
-0.7
stress
Benzethonium chloride 0.003 mM
N.D.
-0.3
+0.3
-0.2
-0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.7
-0.2
+0.2
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.1
-1.0
+0.5
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.3
-0.1
-0.5
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
-0.6
+0.4
-0.0
-0.1
stress
2-pentyl-furan 1.780666667 mM
N.D.
-0.2
-0.2
+0.1
+0.2
motility
inner cut, LB soft agar motility assay
N.D.
-0.2
-0.2
+0.1
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.1
+1.0
-0.2
-0.7
motility
inner cut, LB soft agar motility assay
N.D.
+0.3
-0.4
+0.4
-0.0
nitrogen source
L-Isoleucine (N)
N.D.
-0.0
+0.6
-0.2
-0.0
stress
3-octanone 6.3476 mM
N.D.
+0.4
-0.2
+0.2
+0.0
motility
inner cut, LB soft agar motility assay
N.D.
+0.3
+0.2
+0.2
-0.3
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
N.D.
+0.0
+0.7
+0.0
-0.1
stress
D-Cycloserine 0.125 mg/ml
N.D.
+0.4
-0.3
+0.2
+0.4
nitrogen source
L-Histidine (N)
N.D.
+0.2
+0.6
+0.0
-0.1
stress
3-octanone 6.3476 mM
N.D.
+0.2
+0.3
-0.1
+0.4
stress
Paraquat dichloride 0.04 mg/ml
N.D.
+0.2
+0.5
+0.1
+0.0
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