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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS32090 and AZOBR_RS32095 overlap by 4 nucleotides
AZOBR_RS32095 and AZOBR_RS32100 are separated by 506 nucleotides
AZOBR_RS32100 and AZOBR_RS32105 overlap by 4 nucleotides
AZOBR_RS32105 and AZOBR_RS32110 are separated by 11 nucleotides
AZOBR_RS32090: AZOBR_RS32090 - putative Poly(beta-D-mannuronate) C5 epimerase 3, at 566,616 to 571,850
_RS32090
AZOBR_RS32095: AZOBR_RS32095 - hypothetical protein, at 571,847 to 572,386
_RS32095
AZOBR_RS32100: AZOBR_RS32100 - cytochrome C, at 572,893 to 573,513
_RS32100
AZOBR_RS32105: AZOBR_RS32105 - nitrate reductase, at 573,510 to 573,992
_RS32105
AZOBR_RS32110: AZOBR_RS32110 - nitrate reductase catalytic subunit, at 574,004 to 576,514
_RS32110
Group
Condition
AZOBR
_RS32090
AZOBR
_RS32095
AZOBR
_RS32100
AZOBR
_RS32105
AZOBR
_RS32110
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.1
-0.2
-0.6
-0.9
-0.2
stress
Paraquat dichloride 0.02 mg/ml
+0.0
-0.2
-1.1
-0.8
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.1
-0.5
-0.4
-0.8
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.1
-0.0
-1.0
-0.5
+0.0
stress
Benzethonium chloride 0.003 mM
-0.2
+0.1
-0.5
-0.6
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.9
+0.2
-0.6
-0.1
lb
LB
+0.0
-0.5
+0.1
-0.8
-0.1
stress
nitrate 100 mM
-0.0
+0.0
-0.5
-0.7
-0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.2
-0.2
-0.3
-0.2
-0.2
stress
copper (II) chloride 2 mM
+0.1
-0.2
-0.4
-0.4
-0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.0
-0.3
+0.3
-0.8
-0.3
carbon source
pyruvate (C)
-0.1
-0.3
+0.3
-0.7
-0.1
stress
2-pentyl-furan 1.780666667 mM
-0.3
-0.2
+0.2
-0.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
-0.4
-1.3
+0.8
+0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
-0.1
-1.2
+0.8
+0.1
nitrogen source
L-Threonine (N)
-0.1
+0.1
+0.5
-0.7
-0.2
stress
3-octanone 5.2896 mM
-0.1
-0.7
+0.1
+0.5
-0.0
nitrogen source
Parabanic Acid (N)
-0.0
+0.1
+0.4
-0.6
-0.2
stress
Paraquat dichloride 0.04 mg/ml
-0.0
+0.3
+0.2
-0.8
+0.1
nitrogen source
L-Histidine (N)
-0.0
-0.5
+1.1
-0.6
-0.1
motility
inner cut, LB soft agar motility assay
+0.0
+0.3
-0.7
+0.3
+0.0
stress
D-Cycloserine 0.125 mg/ml
+0.2
+0.4
+1.1
-1.3
-0.2
stress
2-pentyl-furan 2.671 mM
+0.2
-0.2
+0.6
-0.5
+0.0
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
+0.3
-0.3
+0.9
-0.5
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
-0.1
+0.2
+0.6
+0.2
carbon source
L-Malic (C)
+0.0
-0.2
+0.3
+0.7
-0.1
motility
outer cut, LB soft agar motility assay
+0.1
+0.2
-0.6
+1.2
+0.0
stress
2-pentyl-furan 1.335528 mM
+0.1
-0.2
+0.2
+0.9
+0.0
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
-0.4
+1.2
+0.0
carbon source
D-Gluconic Acid (C)
-0.1
-0.1
+0.4
+1.2
+0.0
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