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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS31930 and AZOBR_RS31940 are separated by 2954 nucleotides
AZOBR_RS31940 and AZOBR_RS31945 are separated by 162 nucleotides
AZOBR_RS31945 and AZOBR_RS31950 are separated by 41 nucleotides
AZOBR_RS31950 and AZOBR_RS31955 are separated by 340 nucleotides
AZOBR_RS31930: AZOBR_RS31930 - transcriptional regulator, at 527,610 to 528,365
_RS31930
AZOBR_RS31940: AZOBR_RS31940 - NADH-quinone oxidoreductase subunit F, at 531,320 to 533,005
_RS31940
AZOBR_RS31945: AZOBR_RS31945 - oxalyl-CoA decarboxylase, at 533,168 to 534,925
_RS31945
AZOBR_RS31950: AZOBR_RS31950 - GntR family transcriptional regulator, at 534,967 to 535,656
_RS31950
AZOBR_RS31955: AZOBR_RS31955 - lipid kinase, at 535,997 to 536,881
_RS31955
Group
Condition
AZOBR
_RS31930
AZOBR
_RS31940
AZOBR
_RS31945
AZOBR
_RS31950
AZOBR
_RS31955
motility
outer cut, LB soft agar motility assay
-0.3
-0.2
-0.6
+0.0
-0.5
lb
LB
+0.1
+0.2
-0.0
+0.0
-1.5
motility
inner cut, LB soft agar motility assay
+0.3
-0.1
+0.4
-1.0
-0.7
stress
Chlorite 1 mM
-0.1
-0.1
-0.0
+0.4
-1.0
stress
D-Cycloserine 0.125 mg/ml
+0.1
+0.1
+0.1
+0.2
-1.3
carbon source
Glycerol (C)
+0.1
-0.1
+0.0
+0.3
-1.0
stress
Sisomicin 0.01 mg/ml
+0.4
-0.0
+0.0
+0.6
-1.6
carbon source
L-Leucine (C)
+0.0
-0.1
-0.1
-0.5
+0.4
nitrogen source
L-Glutamic (N)
-0.4
+0.1
+0.4
-0.1
-0.4
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
+0.0
-0.1
-0.3
-0.5
+0.7
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.1
-0.1
+0.0
-0.6
+0.9
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.0
+0.0
-0.4
-0.3
+0.8
nitrogen source
L-Serine (N)
+0.0
-0.1
+0.2
-0.4
+0.6
nitrogen source
L-Leucine (N)
+0.0
-0.1
-0.2
-0.2
+0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
-0.2
-0.2
+0.6
+0.4
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.0
+0.1
-0.1
-0.5
+0.9
stress
3-octanone 6.3476 mM
+0.2
+0.1
+0.1
-0.5
+0.5
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.1
+0.1
+0.3
-0.5
+0.6
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.3
-0.1
-0.1
+0.7
+0.4
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.1
+0.0
-0.4
-0.3
+1.3
stress
2-pentyl-furan 1.335528 mM
-0.1
+0.2
+0.2
-0.2
+0.5
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
+0.4
-0.1
-0.1
+0.7
-0.4
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.1
-0.0
-0.2
-0.0
+1.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
-0.0
+0.4
+0.8
-0.4
nitrogen source
casaminos (N)
-0.2
-0.1
-0.1
+0.6
+0.8
nitrogen source
L-Leucine (N)
+0.2
-0.0
+0.2
+0.3
+0.5
nitrogen source
L-Threonine (N)
+0.0
-0.1
+0.4
+0.5
+0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.0
+0.1
+1.0
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.1
+0.1
+1.6
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+0.2
+0.9
+1.5
-0.2
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