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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS31410 and AZOBR_RS31415 are separated by 94 nucleotides
AZOBR_RS31415 and AZOBR_RS31420 are separated by 285 nucleotides
AZOBR_RS31420 and AZOBR_RS31425 are separated by 209 nucleotides
AZOBR_RS31425 and AZOBR_RS31430 are separated by 151 nucleotides
AZOBR_RS31410: AZOBR_RS31410 - aldo/keto reductase, at 414,445 to 415,506
_RS31410
AZOBR_RS31415: AZOBR_RS31415 - GntR family transcriptional regulator, at 415,601 to 416,383
_RS31415
AZOBR_RS31420: AZOBR_RS31420 - methylglyoxal synthase, at 416,669 to 417,103
_RS31420
AZOBR_RS31425: AZOBR_RS31425 - glucuronate isomerase, at 417,313 to 418,716
_RS31425
AZOBR_RS31430: AZOBR_RS31430 - galactarate dehydratase, at 418,868 to 420,391
_RS31430
Group
Condition
AZOBR
_RS31410
AZOBR
_RS31415
AZOBR
_RS31420
AZOBR
_RS31425
AZOBR
_RS31430
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.3
-1.7
+0.2
-0.0
-0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-0.1
-1.7
+0.2
+0.1
-0.4
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.2
-1.3
+0.0
+0.1
-0.2
stress
2-pentyl-furan 1.335528 mM
+0.1
+0.1
-0.9
-0.7
+0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.2
-1.3
+0.1
+0.2
-0.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.0
-0.7
-0.7
+0.3
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.2
-1.0
+0.1
+0.2
-0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-0.2
-0.9
+0.4
+0.0
-0.3
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.4
-0.6
+0.4
+0.0
-0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.3
-0.8
-0.7
+0.0
+0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
-0.3
-1.4
+0.6
+0.3
-0.1
stress
Benzethonium chloride 0.003 mM
+0.8
-0.3
-1.0
+0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.1
+1.5
-2.0
+0.1
-0.0
stress
Paraquat dichloride 0.04 mg/ml
+0.3
-1.2
+0.5
+0.2
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.2
+1.1
-0.4
-0.3
-0.0
motility
outer cut, LB soft agar motility assay
+0.4
-0.7
+0.4
+0.3
-0.1
stress
Sisomicin 0.01 mg/ml
+0.2
-0.9
+0.4
+0.6
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+1.2
-1.3
+0.2
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.2
+1.3
-0.4
-0.1
+0.0
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+0.9
-0.6
+0.1
-0.1
stress
Cobalt chloride 0.2 mM
+0.3
-0.6
+0.4
+0.3
+0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+1.1
-0.6
-0.1
+0.5
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+1.3
-0.4
-0.4
+0.4
carbon source
D-Gluconic Acid (C)
+0.2
+1.6
-0.9
+0.2
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.2
+1.0
-0.4
+0.4
-0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.1
+1.2
-0.6
+0.2
+0.4
carbon source
D-Gluconic Acid (C)
-0.1
+1.6
-0.3
+0.1
+0.1
carbon source
Glycerol (C)
-0.1
+1.0
+0.6
+0.1
+0.0
motility
inner cut, LB soft agar motility assay
+0.4
+0.5
+0.8
+0.0
-0.1
carbon source
Glycerol (C)
-0.1
+1.4
+0.4
-0.0
-0.0
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