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Protein
Homologs
Fitness for 5 genes in
Azospirillum brasilense Sp245
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS31260 and AZOBR_RS31265 are separated by 17 nucleotides
AZOBR_RS31265 and AZOBR_RS31270 are separated by 264 nucleotides
AZOBR_RS31270 and AZOBR_RS31275 are separated by 41 nucleotides
AZOBR_RS31275 and AZOBR_RS31280 are separated by 306 nucleotides
AZOBR_RS31260: AZOBR_RS31260 - dihydroxy-acid dehydratase, at 378,250 to 380,076
_RS31260
AZOBR_RS31265: AZOBR_RS31265 - lysophospholipase, at 380,094 to 381,314
_RS31265
AZOBR_RS31270: AZOBR_RS31270 - aldose 1-epimerase, at 381,579 to 382,652
_RS31270
AZOBR_RS31275: AZOBR_RS31275 - altronate oxidoreductase, at 382,694 to 384,199
_RS31275
AZOBR_RS31280: AZOBR_RS31280 - hypothetical protein, at 384,506 to 385,237
_RS31280
Group
Condition
AZOBR
_RS31260
AZOBR
_RS31265
AZOBR
_RS31270
AZOBR
_RS31275
AZOBR
_RS31280
nitrogen source
L-Glutamic (N)
+0.1
-0.4
-0.0
-0.3
-0.6
nitrogen source
Urea (N)
-0.1
-0.2
-0.2
-0.2
-0.4
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
-0.3
-0.1
-0.2
-0.1
-0.3
nitrogen source
casaminos (N)
-0.2
-0.3
-0.2
-0.0
-0.3
nitrogen source
L-Phenylalanine (N)
+0.1
-0.1
-0.1
-0.2
-0.6
nitrogen source
Parabanic Acid (N)
-0.1
-0.2
+0.0
-0.1
-0.5
nitrogen source
L-Serine (N)
-0.3
-0.0
-0.1
-0.2
-0.3
nitrogen source
D-Alanine (N)
+0.1
-0.1
-0.2
-0.1
-0.5
carbon source
D-Gluconic Acid (C)
+0.1
-0.1
+0.0
-0.2
-0.7
carbon source
Glycerol (C)
-0.3
-0.3
-0.2
-0.1
+0.1
nitrogen source
Cytosine (N)
+0.2
-0.1
+0.1
-0.2
-0.6
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.4
-0.1
+0.2
+0.1
-0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
+0.1
-0.1
+0.3
-0.7
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.2
+0.0
-0.2
-0.3
+0.2
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.1
+0.2
+0.1
-0.3
-0.4
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
-0.5
+0.2
+0.3
-0.3
-0.1
lb
LB
+0.3
-0.0
+0.1
-0.3
-0.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB
+0.2
-0.0
+0.4
-0.1
-0.6
stress
2-pentyl-furan 1.780666667 mM
-0.2
+0.2
+0.4
-0.2
-0.2
nitrogen source
L-Isoleucine (N)
+0.0
-0.2
-0.0
-0.1
+0.5
stress
2-pentyl-furan 1.335528 mM
+0.2
-0.0
+0.4
-0.2
-0.1
stress
2-pentyl-furan 1.780666667 mM
+0.1
-0.1
-0.2
+0.2
+0.3
stress
2-pentyl-furan 2.671 mM
+0.4
+0.4
+0.2
-0.2
+0.1
stress
Cobalt chloride 0.2 mM
+0.4
-0.0
-0.1
+0.2
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.4
+0.5
+0.0
+0.2
-0.3
lb
LB
+0.1
-0.1
+0.4
+0.2
+0.2
stress
2-pentyl-furan 1.780666667 mM
+0.4
+0.2
-0.0
+0.1
+0.2
stress
Sisomicin 0.01 mg/ml
+0.3
+0.1
+0.1
+0.2
+0.3
stress
3-octanone 6.3476 mM
+0.3
-0.0
+0.3
+0.3
+0.3
stress
D-Cycloserine 0.125 mg/ml
+0.1
+0.4
+0.6
+0.3
+0.0
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