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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS31245 and AZOBR_RS31250 overlap by 4 nucleotides
AZOBR_RS31250 and AZOBR_RS31255 are separated by 8 nucleotides
AZOBR_RS31255 and AZOBR_RS31260 are separated by 111 nucleotides
AZOBR_RS31260 and AZOBR_RS31265 are separated by 17 nucleotides
AZOBR_RS31245: AZOBR_RS31245 - ABC transporter ATP-binding protein, at 374,388 to 375,944
_RS31245
AZOBR_RS31250: AZOBR_RS31250 - ABC transporter permease, at 375,941 to 377,152
_RS31250
AZOBR_RS31255: AZOBR_RS31255 - galactose 1-dehydrogenase, at 377,161 to 378,138
_RS31255
AZOBR_RS31260: AZOBR_RS31260 - dihydroxy-acid dehydratase, at 378,250 to 380,076
_RS31260
AZOBR_RS31265: AZOBR_RS31265 - lysophospholipase, at 380,094 to 381,314
_RS31265
Group
Condition
AZOBR
_RS31245
AZOBR
_RS31250
AZOBR
_RS31255
AZOBR
_RS31260
AZOBR
_RS31265
motility
inner cut, LB soft agar motility assay
-0.6
-0.2
-1.8
-0.1
-0.0
nitrogen source
casaminos (N)
-0.2
-0.2
-1.3
-0.2
-0.3
motility
outer cut, LB soft agar motility assay
-0.7
-0.0
-1.4
+0.2
-0.1
nitrogen fixation control
D-Glucose (C) with ammonium chloride; anaerobic; 8 days
-0.7
-0.9
+0.0
-0.3
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.3
-0.2
-0.7
-0.3
-0.0
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.2
-0.1
-1.0
-0.2
+0.0
motility
inner cut, LB soft agar motility assay
-0.5
-0.1
-0.8
+0.3
-0.3
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.1
-0.1
-0.8
-0.1
+0.1
lb
LB
-0.9
+0.1
-0.2
+0.1
-0.1
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-0.5
-0.1
-0.5
+0.2
-0.1
stress
2-pentyl-furan 1.780666667 mM
-0.0
-0.1
-1.4
+0.4
+0.2
stress
2-pentyl-furan 1.335528 mM
-0.3
+0.2
-0.6
+0.1
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
-0.3
-0.2
+0.3
-0.2
-0.1
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.0
-0.3
-0.1
+0.4
+0.5
stress
D-Cycloserine 0.125 mg/ml
+0.1
-0.2
-0.8
+0.1
+0.4
nitrogen source
L-Isoleucine (N)
+0.4
-0.5
-0.1
+0.0
-0.2
stress
Paraquat dichloride 0.02 mg/ml
+0.1
+0.2
-1.0
-0.1
+0.4
nitrogen source
L-Glutamic (N)
+0.0
-0.2
+0.7
+0.1
-0.4
stress
Cobalt chloride 0.3 mM
-0.3
+0.3
+0.3
-0.2
+0.3
stress
Paraquat dichloride 0.04 mg/ml
+0.5
+0.1
-0.6
+0.4
+0.1
stress
3-octanone 6.3476 mM
+0.6
+0.2
-0.3
+0.1
+0.1
stress
2-Furfuraldehyde 0.2 vol%
+0.3
-0.2
+0.6
+0.1
-0.2
lb
LB
-0.9
+0.3
+0.9
+0.3
-0.0
stress
2-pentyl-furan 2.671 mM
-0.1
-0.3
+0.8
+0.4
+0.4
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.9
-0.4
+0.6
+0.0
-0.0
stress
2-pentyl-furan 1.335528 mM
+0.5
-0.0
+0.6
+0.2
+0.0
stress
2-pentyl-furan 1.780666667 mM
+0.4
+0.2
+0.7
-0.2
+0.2
stress
Bacitracin 0.25 mg/ml
+0.1
+0.3
+0.4
+0.2
+0.3
stress
3-octanone 6.3476 mM
+0.5
+0.8
-0.2
+0.3
-0.0
stress
Sisomicin 0.01 mg/ml
+0.4
+0.4
+0.5
+0.3
+0.1
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