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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS30755 and AZOBR_RS30760 are separated by 61 nucleotides
AZOBR_RS30760 and AZOBR_RS30770 are separated by 1557 nucleotides
AZOBR_RS30770 and AZOBR_RS30775 are separated by 4 nucleotides
AZOBR_RS30775 and AZOBR_RS30780 are separated by 31 nucleotides
AZOBR_RS30755: AZOBR_RS30755 - acylphosphatase, at 261,029 to 261,322
_RS30755
AZOBR_RS30760: AZOBR_RS30760 - purine permease, at 261,384 to 262,745
_RS30760
AZOBR_RS30770: AZOBR_RS30770 - carbon-nitrogen hydrolase, at 264,303 to 265,109
_RS30770
AZOBR_RS30775: AZOBR_RS30775 - agmatinase, at 265,114 to 266,169
_RS30775
AZOBR_RS30780: AZOBR_RS30780 - spermidine/putrescine ABC transporter permease, at 266,201 to 266,995
_RS30780
Group
Condition
AZOBR
_RS30755
AZOBR
_RS30760
AZOBR
_RS30770
AZOBR
_RS30775
AZOBR
_RS30780
stress
2-pentyl-furan 1.780666667 mM
N.D.
-0.2
-0.9
-0.0
-0.0
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
N.D.
-0.2
-0.6
-0.0
-0.3
stress
3-octanone 6.3476 mM
N.D.
-0.5
-0.9
+0.0
+0.3
stress
3-octanone 5.2896 mM
N.D.
-0.1
-0.6
-0.1
-0.1
stress
2-pentyl-furan 1.335528 mM
N.D.
-0.2
-0.5
-0.3
+0.2
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
N.D.
-0.1
-0.6
+0.2
-0.1
stress
6-Pentyl-2H-pyran-2-one 0.5570485 mM
N.D.
-0.2
-0.4
+0.1
-0.2
stress
Benzethonium chloride 0.003 mM
N.D.
-0.0
-0.8
-0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.4
-0.6
+0.2
+0.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
N.D.
+0.1
-0.5
+0.2
+0.1
motility
inner cut, LB soft agar motility assay
N.D.
+0.3
-0.6
+0.1
+0.2
agar plate interaction control
Parafilmed volatile agar plate with no fungus
N.D.
-0.4
+0.4
-0.0
+0.2
stress
D-Cycloserine 0.125 mg/ml
N.D.
+0.1
-0.3
+0.5
+0.0
stress
2-pentyl-furan 1.335528 mM
N.D.
-0.2
+0.2
+0.2
+0.3
nitrogen source
L-Lysine (N)
N.D.
+0.2
+0.3
+0.1
+0.3
carbon source
D-Gluconic Acid (C)
N.D.
+0.0
+0.3
+0.3
+0.2
nitrogen source
Urea (N)
N.D.
+0.4
+0.2
+0.2
+0.1
nitrogen source
L-Glutamic (N)
N.D.
+0.1
+0.1
+0.6
-0.0
nitrogen source
L-Threonine (N)
N.D.
+0.1
+0.5
+0.1
+0.2
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
N.D.
+0.6
+0.0
+0.4
-0.1
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
N.D.
+0.3
+0.2
+0.5
-0.0
nitrogen source
L-Serine (N)
N.D.
-0.0
+0.5
+0.2
+0.3
carbon source
Glycerol (C)
N.D.
+0.3
+0.4
+0.3
+0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
N.D.
+0.4
+0.3
+0.5
+0.1
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
N.D.
+0.9
+0.2
+0.3
-0.0
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
N.D.
+0.4
+0.5
+0.4
+0.1
anaerobic; rich media
LB; anaerobic
N.D.
+0.3
+0.5
+0.5
+0.1
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days
N.D.
+0.5
+0.8
-0.0
+0.5
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
N.D.
+0.5
+0.5
+0.5
+0.2
nitrogen fixation
L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days
N.D.
+0.9
+0.6
+0.7
+0.2
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