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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS30610 and AZOBR_RS30615 are separated by 98 nucleotides
AZOBR_RS30615 and AZOBR_RS30620 are separated by 484 nucleotides
AZOBR_RS30620 and AZOBR_RS30625 are separated by 5 nucleotides
AZOBR_RS30625 and AZOBR_RS30630 are separated by 133 nucleotides
AZOBR_RS30610: AZOBR_RS30610 - acetyl-CoA acetyltransferase, at 223,910 to 225,085
_RS30610
AZOBR_RS30615: AZOBR_RS30615 - acetoacetyl-CoA reductase, at 225,184 to 225,906
_RS30615
AZOBR_RS30620: AZOBR_RS30620 - hypothetical protein, at 226,391 to 226,792
_RS30620
AZOBR_RS30625: AZOBR_RS30625 - MFS transporter, at 226,798 to 228,033
_RS30625
AZOBR_RS30630: AZOBR_RS30630 - transcriptional regulator, at 228,167 to 229,102
_RS30630
Group
Condition
AZOBR
_RS30610
AZOBR
_RS30615
AZOBR
_RS30620
AZOBR
_RS30625
AZOBR
_RS30630
nitrogen source
L-Glutamic (N)
-3.9
-0.3
N.D.
+0.1
N.D.
nitrogen source
L-Threonine (N)
-3.2
+0.3
N.D.
+0.3
N.D.
carbon source
D-Fructose (C)
-2.0
-0.4
N.D.
-0.1
N.D.
nitrogen source
L-Isoleucine (N)
-1.6
-0.5
N.D.
-0.3
N.D.
stress
2-pentyl-furan 1.780666667 mM
-2.5
-0.0
N.D.
+0.1
N.D.
nitrogen fixation
L-Malic (C) and no Nitrogen; Wolfe's minerals without nitroloacetic acid; 3 days
-1.4
-0.6
N.D.
-0.3
N.D.
stress
2-Furfuraldehyde 0.2 vol%
-2.1
-0.4
N.D.
+0.2
N.D.
stress
Chlorite 1 mM
-2.0
-0.1
N.D.
-0.0
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
-1.2
-0.7
N.D.
-0.2
N.D.
stress
2-pentyl-furan 1.335528 mM
-1.4
-0.4
N.D.
-0.1
N.D.
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 3 days
-0.9
-0.8
N.D.
-0.3
N.D.
stress
Paraquat dichloride 0.04 mg/ml
-1.3
-0.5
N.D.
-0.0
N.D.
carbon source
D-Gluconic Acid (C)
-1.4
-0.7
N.D.
+0.4
N.D.
lb no stress control
LB no stress control
-1.8
+0.2
N.D.
-0.1
N.D.
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
-1.8
+0.2
N.D.
-0.1
N.D.
stress
benzoic 0.145 mg/ml
-1.6
-0.1
N.D.
+0.0
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.9
+0.6
N.D.
-0.2
N.D.
stress
Nickel (II) chloride 0.5 mM
-1.6
+0.0
N.D.
+0.1
N.D.
stress
3-octanone 6.3476 mM
-1.2
+0.3
N.D.
-0.2
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
-1.3
+0.2
N.D.
+0.3
N.D.
motility
inner cut, LB soft agar motility assay
+1.0
-0.9
N.D.
-0.2
N.D.
motility
inner cut, LB soft agar motility assay
+1.1
-0.2
N.D.
-0.5
N.D.
motility
inner cut, LB soft agar motility assay
+1.1
-0.6
N.D.
+0.1
N.D.
stress
Cobalt chloride 0.2 mM
+1.1
-0.6
N.D.
+0.1
N.D.
nitrogen source
nitrate (N)
+1.4
-0.5
N.D.
-0.0
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.3
+0.5
N.D.
-0.1
N.D.
carbon source
L-Malic (C)
+1.6
+0.3
N.D.
-0.1
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.6
+0.3
N.D.
+0.2
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+1.2
+0.9
N.D.
+0.2
N.D.
motility
outer cut, LB soft agar motility assay
+3.0
-0.5
N.D.
-0.1
N.D.
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