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Fitness for 5 genes in
Azospirillum brasilense Sp245
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AZOBR_RS29410 and AZOBR_RS29415 are separated by 71 nucleotides
AZOBR_RS29415 and AZOBR_RS29420 overlap by 4 nucleotides
AZOBR_RS29420 and AZOBR_RS29425 are separated by 519 nucleotides
AZOBR_RS29425 and AZOBR_RS29430 are separated by 16 nucleotides
AZOBR_RS29410: AZOBR_RS29410 - sulfonate ABC transporter substrate-binding protein, at 719,278 to 720,351
_RS29410
AZOBR_RS29415: AZOBR_RS29415 - hypothetical protein, at 720,423 to 721,124
_RS29415
AZOBR_RS29420: AZOBR_RS29420 - nitrilase, at 721,121 to 722,050
_RS29420
AZOBR_RS29425: AZOBR_RS29425 - hypothetical protein, at 722,570 to 723,424
_RS29425
AZOBR_RS29430: AZOBR_RS29430 - hemin ABC transporter substrate-binding protein, at 723,441 to 724,316
_RS29430
Group
Condition
AZOBR
_RS29410
AZOBR
_RS29415
AZOBR
_RS29420
AZOBR
_RS29425
AZOBR
_RS29430
stress
2-pentyl-furan 1.780666667 mM
-1.2
-0.4
+0.0
-0.4
-1.4
motility
inner cut, LB soft agar motility assay
-0.3
-0.6
-0.1
-0.4
-0.6
stress
2-pentyl-furan 1.780666667 mM
-0.9
+0.1
-0.3
-0.3
-0.6
stress
2-pentyl-furan 1.335528 mM
+0.7
-1.2
+0.2
+0.1
-1.6
stress
Paraquat dichloride 0.04 mg/ml
-0.7
-0.3
-0.1
-0.4
-0.4
stress
Benzethonium chloride 0.003 mM
-1.1
+0.2
+0.1
-0.7
+0.0
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.4
-0.9
+0.2
-0.3
-0.3
stress
3-octanone 6.3476 mM
+0.2
+0.8
+0.1
-1.7
-1.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB
-0.5
+0.3
-0.0
-0.9
-0.5
stress
2-pentyl-furan 1.780666667 mM
-0.4
+0.8
-0.3
+0.2
-1.6
nitrogen source
L-Isoleucine (N)
-1.3
+0.2
-0.0
+0.2
-0.2
stress
3-octanone 6.3476 mM
-0.1
+0.3
+0.1
-0.9
-0.6
stress
3-octanone 5.2896 mM
-0.3
+0.2
+0.2
-0.6
-0.5
supernatant control
Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
-0.9
+0.2
+0.3
-0.4
-0.2
stress
Paraquat dichloride 0.02 mg/ml
+0.3
-0.3
+0.2
-1.3
+0.1
stress
1-octen-3-ol 0.6030326667 mM
-0.1
+0.5
+0.1
-1.2
-0.3
motility
outer cut, LB soft agar motility assay
-0.6
+0.4
-0.5
+0.7
-0.9
carbon source
D-Gluconic Acid (C)
+0.5
+0.3
-0.2
-0.8
-0.7
stress
2-pentyl-furan 2.671 mM
-0.2
+0.9
+0.0
-1.3
-0.2
stress
3-octanone 4.2317 mM
-0.1
+0.6
+0.1
-0.6
-0.4
stress
3-octanone 6.3476 mM
+0.0
+1.4
+0.2
-0.8
-1.1
nitrogen source
L-Histidine (N)
-0.2
+0.4
-0.2
-0.7
+0.5
stress
3-octanone 6.3476 mM
-0.3
+1.0
+0.1
-0.6
-0.3
stress
1-octen-3-ol 0.6030326667 mM
+0.1
+0.7
+0.2
-0.9
-0.2
motility
inner cut, LB soft agar motility assay
-0.0
+1.0
-0.2
+0.3
-1.0
stress
6-Pentyl-2H-pyran-2-one 0.6266795 mM
+0.1
+0.8
+0.1
-0.3
-0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.9
+0.1
-0.1
+0.7
-0.3
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
-0.1
-0.1
+0.7
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
-0.1
-0.1
+0.3
+0.7
nitrogen fixation control
L-Malic (C) with ammonium chloride; anaerobic; 8 days
+0.5
+0.6
+0.2
+0.5
+0.3
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